Hb_005883_020

Information

Type -
Description -
Location Contig5883: 17530-23222
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08030g
description POPTRDRAFT_1101177; hypothetical protein
nr
ID XP_012080160.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
swissprot
ID Q9S7Q2
description Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
trembl
ID A0A067K823
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11544 PE=4 SV=1
Gene Ontology
ID GO:0009508
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50027: 17897-23230 , PASA_asmbl_50028: 20317-20529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
2 Hb_003900_030 0.08570752 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
3 Hb_001828_120 0.086086575 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
4 Hb_000358_140 0.0930846952 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007192_090 0.1024161343 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
6 Hb_004254_100 0.1103215664 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
7 Hb_002233_130 0.1111098116 - - transporter, putative [Ricinus communis]
8 Hb_002328_040 0.111661607 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
9 Hb_002942_130 0.119528091 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
10 Hb_000331_130 0.1218053531 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
11 Hb_000264_230 0.1220241409 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
12 Hb_013405_160 0.1241752168 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_007545_130 0.1242247379 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_002600_060 0.1246722781 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_000771_170 0.1260330545 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000245_150 0.126232935 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_003506_050 0.1264062056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007035_040 0.1291302014 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
19 Hb_000363_060 0.1297765775 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_002249_030 0.1312041221 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005883_020 Hb_005883_020 Hb_003900_030 Hb_003900_030 Hb_005883_020--Hb_003900_030 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_000358_140 Hb_000358_140 Hb_005883_020--Hb_000358_140 Hb_007192_090 Hb_007192_090 Hb_005883_020--Hb_007192_090 Hb_004254_100 Hb_004254_100 Hb_005883_020--Hb_004254_100 Hb_002233_130 Hb_002233_130 Hb_005883_020--Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_003529_140 Hb_003529_140 Hb_001828_120--Hb_003529_140 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_002600_070 Hb_002600_070 Hb_001828_120--Hb_002600_070 Hb_001828_120--Hb_007192_090 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_002027_090 Hb_002027_090 Hb_000358_140--Hb_002027_090 Hb_010812_050 Hb_010812_050 Hb_000358_140--Hb_010812_050 Hb_006816_180 Hb_006816_180 Hb_000358_140--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_000358_140--Hb_041327_020 Hb_000358_140--Hb_002233_130 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_002942_130 Hb_002942_130 Hb_004254_100--Hb_002942_130 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8607 17.8716 14.5334 5.22313 10.4032 10.0409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.382 3.31211 4.69776 5.4019 27.9037

CAGE analysis