Hb_041327_020

Information

Type -
Description -
Location Contig41327: 34656-37029
Sequence    

Annotation

kegg
ID rcu:RCOM_1536990
description hypothetical protein
nr
ID XP_002519613.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC0
description 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1
trembl
ID B9S0U4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1536990 PE=4 SV=1
Gene Ontology
ID GO:0090471
description 15-cis-zeta-carotene chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40964: 34600-36687 , PASA_asmbl_40965: 36698-36902
cDNA
(Sanger)
(ID:Location)		 015_F24.ab1: 36335-36687

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041327_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005496_050 0.0799137661 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
3 Hb_098209_010 0.0894212949 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
4 Hb_132840_110 0.0897043075 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_001619_050 0.0898240796 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
6 Hb_000320_470 0.0922627519 - - calcium-dependent protein kinase [Hevea brasiliensis]
7 Hb_000445_140 0.0930987016 - - hypothetical protein RCOM_0561550 [Ricinus communis]
8 Hb_001014_100 0.0931563207 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
9 Hb_000376_060 0.0944908951 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
10 Hb_001377_110 0.095370899 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
11 Hb_000069_570 0.0961070994 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_000086_440 0.0961402916 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
13 Hb_002027_090 0.0969588818 - - -
14 Hb_017151_010 0.0970858203 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
15 Hb_000331_560 0.0972814626 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
16 Hb_005895_010 0.0978830855 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
17 Hb_004531_100 0.0985130318 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
18 Hb_000022_190 0.0993929066 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
19 Hb_000684_350 0.0995598956 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
20 Hb_002539_110 0.099610841 - - hypothetical protein JCGZ_15697 [Jatropha curcas]

Gene co-expression network

sample Hb_041327_020 Hb_041327_020 Hb_005496_050 Hb_005496_050 Hb_041327_020--Hb_005496_050 Hb_098209_010 Hb_098209_010 Hb_041327_020--Hb_098209_010 Hb_132840_110 Hb_132840_110 Hb_041327_020--Hb_132840_110 Hb_001619_050 Hb_001619_050 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_000445_140 Hb_000445_140 Hb_041327_020--Hb_000445_140 Hb_001014_100 Hb_001014_100 Hb_005496_050--Hb_001014_100 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_005496_050--Hb_000445_140 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_000457_230 Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001377_110 Hb_001377_110 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_005895_010 Hb_005895_010 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_001619_050--Hb_000445_140 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_001619_050--Hb_001014_100 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_002870_020 Hb_002870_020 Hb_001619_050--Hb_002870_020 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_000445_140--Hb_001014_100 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_000445_140--Hb_002870_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8176 19.8028 19.7014 19.1782 16.9023 18.0667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.26956 7.64675 8.85205 10.2971 30.4446

CAGE analysis