Hb_005038_030

Information

Type -
Description -
Location Contig5038: 25741-41144
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13200g
description hypothetical protein
nr
ID XP_012075405.1
description PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
swissprot
ID Q9FN48
description Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1
trembl
ID U5FWE0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45922: 22085-34369 , PASA_asmbl_45923: 25778-41019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005038_030 0.0 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
2 Hb_001352_080 0.0816639625 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
3 Hb_001907_070 0.1019907536 - - 50S ribosomal protein L1p, putative [Ricinus communis]
4 Hb_004846_050 0.1286413702 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
5 Hb_005618_150 0.1374573358 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
6 Hb_006911_070 0.1447355345 - - 50S ribosomal protein L1p, putative [Ricinus communis]
7 Hb_002016_010 0.1458582462 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
8 Hb_002498_170 0.1474963396 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
9 Hb_001959_240 0.1479353164 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000802_050 0.1495927059 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
11 Hb_163950_070 0.1522035807 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_004871_010 0.1524256443 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
13 Hb_000322_040 0.1526964524 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_000684_430 0.1532489713 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
15 Hb_006846_160 0.1554781665 - - electron transporter, putative [Ricinus communis]
16 Hb_001300_130 0.159724617 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
17 Hb_000023_370 0.1617338679 - - -
18 Hb_002217_140 0.1630394633 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
19 Hb_001723_030 0.1633196298 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
20 Hb_006252_030 0.164396288 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]

Gene co-expression network

sample Hb_005038_030 Hb_005038_030 Hb_001352_080 Hb_001352_080 Hb_005038_030--Hb_001352_080 Hb_001907_070 Hb_001907_070 Hb_005038_030--Hb_001907_070 Hb_004846_050 Hb_004846_050 Hb_005038_030--Hb_004846_050 Hb_005618_150 Hb_005618_150 Hb_005038_030--Hb_005618_150 Hb_006911_070 Hb_006911_070 Hb_005038_030--Hb_006911_070 Hb_002016_010 Hb_002016_010 Hb_005038_030--Hb_002016_010 Hb_001352_080--Hb_001907_070 Hb_002498_170 Hb_002498_170 Hb_001352_080--Hb_002498_170 Hb_001959_240 Hb_001959_240 Hb_001352_080--Hb_001959_240 Hb_001352_080--Hb_006911_070 Hb_006846_160 Hb_006846_160 Hb_001352_080--Hb_006846_160 Hb_001907_070--Hb_005618_150 Hb_001907_070--Hb_006911_070 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001723_030 Hb_001723_030 Hb_001907_070--Hb_001723_030 Hb_000802_050 Hb_000802_050 Hb_004846_050--Hb_000802_050 Hb_004846_050--Hb_001907_070 Hb_001300_130 Hb_001300_130 Hb_004846_050--Hb_001300_130 Hb_004846_050--Hb_001723_030 Hb_002027_410 Hb_002027_410 Hb_004846_050--Hb_002027_410 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_005618_150--Hb_004871_010 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150 Hb_003529_140 Hb_003529_140 Hb_002016_010--Hb_003529_140 Hb_000363_060 Hb_000363_060 Hb_002016_010--Hb_000363_060 Hb_006569_040 Hb_006569_040 Hb_002016_010--Hb_006569_040 Hb_006787_090 Hb_006787_090 Hb_002016_010--Hb_006787_090 Hb_010174_090 Hb_010174_090 Hb_002016_010--Hb_010174_090 Hb_002016_010--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5104 6.31868 63.9969 13.4957 26.5169 11.842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81594 6.72185 6.65414 4.27078 78.1792

CAGE analysis