Hb_006846_160

Information

Type -
Description -
Location Contig6846: 122755-124118
Sequence    

Annotation

kegg
ID rcu:RCOM_1503210
description electron transporter, putative
nr
ID XP_002511078.1
description electron transporter, putative [Ricinus communis]
swissprot
ID P24297
description Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rub PE=1 SV=2
trembl
ID B9RA53
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1503210 PE=4 SV=1
Gene Ontology
ID GO:0005506
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54081: 122759-123908 , PASA_asmbl_54082: 123173-123396 , PASA_asmbl_54083: 124706-129216 , PASA_asmbl_54084: 124706-129024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_160 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_002498_170 0.1051809033 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000934_260 0.1117608118 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000322_040 0.1158912312 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
5 Hb_006252_030 0.1231481923 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
6 Hb_000538_130 0.1267278849 - - phytoene synthase 2 [Manihot esculenta]
7 Hb_003862_040 0.1304672732 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_000749_200 0.1319522711 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
9 Hb_000340_410 0.1381177818 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_001638_310 0.1393043661 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
11 Hb_006618_070 0.1395875857 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
12 Hb_003683_030 0.1434923051 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_000637_070 0.1462494663 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
14 Hb_001352_080 0.1525120184 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
15 Hb_000836_350 0.1528986253 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
16 Hb_005000_060 0.1545582909 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
17 Hb_001975_050 0.1553313818 - - Tyrosine-specific transport protein, putative [Ricinus communis]
18 Hb_005038_030 0.1554781665 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
19 Hb_003376_390 0.1563868247 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
20 Hb_000031_100 0.1565692705 - - amine oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006846_160 Hb_006846_160 Hb_002498_170 Hb_002498_170 Hb_006846_160--Hb_002498_170 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_000322_040 Hb_000322_040 Hb_006846_160--Hb_000322_040 Hb_006252_030 Hb_006252_030 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_002498_170--Hb_000322_040 Hb_004208_090 Hb_004208_090 Hb_000934_260--Hb_004208_090 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000934_260--Hb_000322_040 Hb_001999_260 Hb_001999_260 Hb_000934_260--Hb_001999_260 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_000322_040--Hb_006252_030 Hb_000056_310 Hb_000056_310 Hb_000322_040--Hb_000056_310 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_001301_330 Hb_001301_330 Hb_000538_130--Hb_001301_330 Hb_000123_370 Hb_000123_370 Hb_000538_130--Hb_000123_370 Hb_000392_450 Hb_000392_450 Hb_000538_130--Hb_000392_450 Hb_000538_130--Hb_000749_200 Hb_030545_010 Hb_030545_010 Hb_000538_130--Hb_030545_010 Hb_001638_310 Hb_001638_310 Hb_003862_040--Hb_001638_310 Hb_005000_060 Hb_005000_060 Hb_003862_040--Hb_005000_060 Hb_000031_100 Hb_000031_100 Hb_003862_040--Hb_000031_100 Hb_148146_010 Hb_148146_010 Hb_003862_040--Hb_148146_010 Hb_003862_040--Hb_000934_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1667 26.8211 144.225 36.2673 34.4419 15.9224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2415 12.4846 6.03564 1.96623 103.257

CAGE analysis