Hb_001301_330

Information

Type -
Description -
Location Contig1301: 250376-254587
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42650g
description POPTRDRAFT_829919; OTU-like cysteine protease family protein
nr
ID XP_002300474.2
description OTU-like cysteine protease family protein [Populus trichocarpa]
swissprot
ID Q567B1
description Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
trembl
ID B9GHX0
description OTU-like cysteine protease family protein OS=Populus trichocarpa GN=POPTR_0001s42650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09049: 250338-254528 , PASA_asmbl_09050: 252621-254481 , PASA_asmbl_09051: 250875-251601 , PASA_asmbl_09053: 255551-258957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_330 0.0 - - OTU-like cysteine protease family protein [Populus trichocarpa]
2 Hb_000538_130 0.0785366704 - - phytoene synthase 2 [Manihot esculenta]
3 Hb_000392_450 0.1207303937 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
4 Hb_006816_190 0.1258071418 - - calreticulin family protein [Populus trichocarpa]
5 Hb_000211_040 0.12633343 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
6 Hb_000749_200 0.1289931462 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
7 Hb_007263_010 0.1297641384 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000181_060 0.1301031278 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
9 Hb_006618_070 0.1344075736 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
10 Hb_002027_320 0.140024076 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
11 Hb_006252_030 0.1434177523 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
12 Hb_000438_130 0.1439104557 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
13 Hb_007304_030 0.1450958902 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
14 Hb_004517_030 0.145286149 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000212_250 0.1496241143 - - conserved hypothetical protein [Ricinus communis]
16 Hb_030545_010 0.150110486 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
17 Hb_004994_080 0.1527462089 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002498_170 0.1530280029 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_163950_070 0.1531025753 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
20 Hb_011381_040 0.1569094869 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001301_330 Hb_001301_330 Hb_000538_130 Hb_000538_130 Hb_001301_330--Hb_000538_130 Hb_000392_450 Hb_000392_450 Hb_001301_330--Hb_000392_450 Hb_006816_190 Hb_006816_190 Hb_001301_330--Hb_006816_190 Hb_000211_040 Hb_000211_040 Hb_001301_330--Hb_000211_040 Hb_000749_200 Hb_000749_200 Hb_001301_330--Hb_000749_200 Hb_007263_010 Hb_007263_010 Hb_001301_330--Hb_007263_010 Hb_006846_160 Hb_006846_160 Hb_000538_130--Hb_006846_160 Hb_000123_370 Hb_000123_370 Hb_000538_130--Hb_000123_370 Hb_000538_130--Hb_000392_450 Hb_000538_130--Hb_000749_200 Hb_030545_010 Hb_030545_010 Hb_000538_130--Hb_030545_010 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_004013_030 Hb_004013_030 Hb_006816_190--Hb_004013_030 Hb_001623_490 Hb_001623_490 Hb_006816_190--Hb_001623_490 Hb_000645_180 Hb_000645_180 Hb_006816_190--Hb_000645_180 Hb_000645_070 Hb_000645_070 Hb_006816_190--Hb_000645_070 Hb_004907_090 Hb_004907_090 Hb_006816_190--Hb_004907_090 Hb_003687_080 Hb_003687_080 Hb_006816_190--Hb_003687_080 Hb_015292_040 Hb_015292_040 Hb_000211_040--Hb_015292_040 Hb_006555_040 Hb_006555_040 Hb_000211_040--Hb_006555_040 Hb_000123_140 Hb_000123_140 Hb_000211_040--Hb_000123_140 Hb_000140_440 Hb_000140_440 Hb_000211_040--Hb_000140_440 Hb_004994_080 Hb_004994_080 Hb_000211_040--Hb_004994_080 Hb_000211_040--Hb_007263_010 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_006252_030 Hb_006252_030 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_007263_010--Hb_004994_080 Hb_007263_010--Hb_002027_320 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.989762 0.769745 7.92209 2.90032 1.87065 0.912608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14741 0.999272 0.179817 0.723231 3.46735

CAGE analysis