Hb_000212_250

Information

Type -
Description -
Location Contig212: 282414-286940
Sequence    

Annotation

kegg
ID rcu:RCOM_1077660
description hypothetical protein
nr
ID XP_002514815.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21959: 283833-284820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007217_010 0.0693062625 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
3 Hb_004517_030 0.0876901461 - - conserved hypothetical protein [Ricinus communis]
4 Hb_153553_040 0.0961109823 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
5 Hb_011476_030 0.096716795 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
6 Hb_000392_450 0.1007628533 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
7 Hb_005665_090 0.101564343 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
8 Hb_008375_030 0.1051569773 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
9 Hb_000574_470 0.1083189154 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000402_020 0.1091075282 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000181_060 0.1134790468 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
12 Hb_000094_100 0.1143025827 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
13 Hb_012779_080 0.1170691509 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
14 Hb_006588_190 0.1175874592 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
15 Hb_172632_060 0.1177831117 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
16 Hb_003752_090 0.118642937 - - chitinase, putative [Ricinus communis]
17 Hb_001390_100 0.120951911 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
18 Hb_001623_490 0.1210190945 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
19 Hb_009288_040 0.1211222506 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
20 Hb_003020_250 0.1214346095 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_250 Hb_000212_250 Hb_007217_010 Hb_007217_010 Hb_000212_250--Hb_007217_010 Hb_004517_030 Hb_004517_030 Hb_000212_250--Hb_004517_030 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_011476_030 Hb_011476_030 Hb_000212_250--Hb_011476_030 Hb_000392_450 Hb_000392_450 Hb_000212_250--Hb_000392_450 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_004517_030--Hb_000392_450 Hb_004517_030--Hb_007217_010 Hb_001386_090 Hb_001386_090 Hb_004517_030--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_004517_030--Hb_003397_030 Hb_003874_010 Hb_003874_010 Hb_004517_030--Hb_003874_010 Hb_000445_210 Hb_000445_210 Hb_153553_040--Hb_000445_210 Hb_000140_440 Hb_000140_440 Hb_153553_040--Hb_000140_440 Hb_005217_030 Hb_005217_030 Hb_153553_040--Hb_005217_030 Hb_153553_040--Hb_007217_010 Hb_153553_040--Hb_011476_030 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_011476_030--Hb_005665_090 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_000392_450--Hb_003874_010 Hb_012779_080 Hb_012779_080 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61849 4.6239 23.5137 6.55019 2.10748 3.10767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7291 3.90901 1.37068 4.05621 12.4641

CAGE analysis