Hb_011476_030

Information

Type -
Description -
Location Contig11476: 9827-12249
Sequence    

Annotation

kegg
ID rcu:RCOM_0703150
description transcription factor, putative
nr
ID XP_012070103.1
description PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03488 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04457: 9400-12085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011476_030 0.0 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
2 Hb_007217_010 0.0930347344 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
3 Hb_000574_470 0.0950539269 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000212_250 0.096716795 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027445_100 0.1012601051 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
6 Hb_002915_010 0.1061172962 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
7 Hb_005665_090 0.1065250775 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
8 Hb_008375_030 0.1070196169 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
9 Hb_000094_100 0.1084151148 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
10 Hb_000152_180 0.1125584573 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
11 Hb_005332_080 0.1132042749 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
12 Hb_009288_040 0.1151406187 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_153553_040 0.1158336261 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
14 Hb_001430_020 0.116255102 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
15 Hb_012779_080 0.116776862 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
16 Hb_172632_060 0.1178865442 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
17 Hb_001959_060 0.1179683812 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
18 Hb_003883_010 0.1185837964 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
19 Hb_005217_030 0.1199246435 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
20 Hb_001390_100 0.1221716453 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011476_030 Hb_011476_030 Hb_007217_010 Hb_007217_010 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_000212_250 Hb_000212_250 Hb_011476_030--Hb_000212_250 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_011476_030--Hb_005665_090 Hb_007217_010--Hb_000212_250 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_000392_450 Hb_000392_450 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_172632_060 Hb_172632_060 Hb_000574_470--Hb_172632_060 Hb_003376_390 Hb_003376_390 Hb_000574_470--Hb_003376_390 Hb_005618_080 Hb_005618_080 Hb_000574_470--Hb_005618_080 Hb_000574_470--Hb_000212_250 Hb_001959_060 Hb_001959_060 Hb_000574_470--Hb_001959_060 Hb_004517_030 Hb_004517_030 Hb_000212_250--Hb_004517_030 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_000212_250--Hb_000392_450 Hb_000212_250--Hb_005665_090 Hb_001649_030 Hb_001649_030 Hb_027445_100--Hb_001649_030 Hb_000334_050 Hb_000334_050 Hb_027445_100--Hb_000334_050 Hb_002928_030 Hb_002928_030 Hb_027445_100--Hb_002928_030 Hb_004223_270 Hb_004223_270 Hb_027445_100--Hb_004223_270 Hb_009288_040 Hb_009288_040 Hb_027445_100--Hb_009288_040 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_005665_090--Hb_012779_080 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3989 48.8796 166.949 46.5702 16.2111 15.1875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.095 37.3976 22.5837 28.6503 121.575

CAGE analysis