Hb_027445_100

Information

Type -
Description -
Location Contig27445: 97313-101879
Sequence    

Annotation

kegg
ID rcu:RCOM_1063930
description monodehydroascorbate reductase, putative (EC:1.6.5.4)
nr
ID XP_012072402.1
description PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
swissprot
ID Q9LK94
description Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1
trembl
ID B9S635
description Monodehydroascorbate reductase, putative OS=Ricinus communis GN=RCOM_1063930 PE=4 SV=1
Gene Ontology
ID GO:0005778
description probable monodehydroascorbate cytoplasmic isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28744: 97361-101527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_100 0.0 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
2 Hb_001649_030 0.0962488734 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
3 Hb_000334_050 0.098015276 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_002928_030 0.0989578329 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
5 Hb_011476_030 0.1012601051 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
6 Hb_004223_270 0.1016164691 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
7 Hb_009288_040 0.1067422851 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_001307_100 0.1068121872 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_000933_110 0.1095341364 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
10 Hb_003752_090 0.1099528767 - - chitinase, putative [Ricinus communis]
11 Hb_025194_090 0.1120924241 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
12 Hb_000358_040 0.1167186193 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
13 Hb_003994_080 0.1167457196 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
14 Hb_000579_040 0.1172215991 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
15 Hb_003376_390 0.1183969278 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
16 Hb_004672_020 0.1198773153 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_003029_020 0.1207013512 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_003664_030 0.1223429955 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
19 Hb_000175_050 0.1233365918 - - -
20 Hb_001269_500 0.1265407927 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_027445_100 Hb_027445_100 Hb_001649_030 Hb_001649_030 Hb_027445_100--Hb_001649_030 Hb_000334_050 Hb_000334_050 Hb_027445_100--Hb_000334_050 Hb_002928_030 Hb_002928_030 Hb_027445_100--Hb_002928_030 Hb_011476_030 Hb_011476_030 Hb_027445_100--Hb_011476_030 Hb_004223_270 Hb_004223_270 Hb_027445_100--Hb_004223_270 Hb_009288_040 Hb_009288_040 Hb_027445_100--Hb_009288_040 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_007217_010 Hb_007217_010 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_000212_250 Hb_000212_250 Hb_011476_030--Hb_000212_250 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_011476_030--Hb_005665_090 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_022425_050 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_009288_040--Hb_003752_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39737 19.5891 43.1926 18.8286 5.48207 6.26756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8545 9.43039 6.51628 8.61444 49.2365

CAGE analysis