Hb_000933_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig933: 157463-162166
Sequence    

Annotation

kegg
ID rcu:RCOM_1622300
description WRKY transcription factor, putative
nr
ID XP_012067716.1
description PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
swissprot
ID Q9ZQ70
description Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1
trembl
ID B9RCY6
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1622300 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62899: 157537-161769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_110 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
2 Hb_004223_270 0.0830194516 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
3 Hb_000334_050 0.0938151121 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_000260_160 0.0969853173 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
5 Hb_000446_040 0.0981889976 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
6 Hb_004346_040 0.1051483436 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
7 Hb_027445_100 0.1095341364 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
8 Hb_002928_030 0.1158349269 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_002799_130 0.118699657 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
10 Hb_005015_020 0.1187831188 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_008120_040 0.1204260284 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
12 Hb_004052_110 0.1212859606 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
13 Hb_022425_050 0.1217685999 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
14 Hb_000005_100 0.1224236772 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_012539_040 0.1258665917 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
16 Hb_013968_010 0.1277032566 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
17 Hb_001649_030 0.1292440764 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
18 Hb_002383_050 0.1297970095 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
19 Hb_004324_120 0.1303711156 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
20 Hb_001865_010 0.1340561739 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]

Gene co-expression network

sample Hb_000933_110 Hb_000933_110 Hb_004223_270 Hb_004223_270 Hb_000933_110--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_000933_110--Hb_000334_050 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000446_040 Hb_000446_040 Hb_000933_110--Hb_000446_040 Hb_004346_040 Hb_004346_040 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_004223_270--Hb_000334_050 Hb_022425_050 Hb_022425_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_000334_050--Hb_022425_050 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_008120_040 Hb_008120_040 Hb_000260_160--Hb_008120_040 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_013968_010 Hb_013968_010 Hb_000260_160--Hb_013968_010 Hb_004117_270 Hb_004117_270 Hb_000260_160--Hb_004117_270 Hb_003055_070 Hb_003055_070 Hb_000446_040--Hb_003055_070 Hb_005015_020 Hb_005015_020 Hb_000446_040--Hb_005015_020 Hb_000446_040--Hb_000334_050 Hb_000446_040--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_000446_040--Hb_004324_120 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_004346_040--Hb_005015_020 Hb_004346_040--Hb_013968_010 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_027445_100--Hb_001649_030 Hb_002928_030 Hb_002928_030 Hb_027445_100--Hb_002928_030 Hb_011476_030 Hb_011476_030 Hb_027445_100--Hb_011476_030 Hb_027445_100--Hb_004223_270 Hb_009288_040 Hb_009288_040 Hb_027445_100--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91181 15.5141 24.2607 9.07809 2.92522 2.22885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15399 4.93078 1.98541 5.62782 26.1763

CAGE analysis