Hb_000005_100

Information

Type -
Description -
Location Contig5: 140444-146223
Sequence    

Annotation

kegg
ID rcu:RCOM_0475420
description pheophorbide A oxygenase, putative
nr
ID XP_012064674.1
description PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYC2
description Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1
trembl
ID A0A067LI95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05421 PE=4 SV=1
Gene Ontology
ID GO:0009534
description pheophorbide a chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45685: 140730-145965
cDNA
(Sanger)
(ID:Location)		 052_N01r.ab1: 146200-146642

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_100 0.0 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
2 Hb_004223_270 0.0641205043 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
3 Hb_022425_050 0.1054902602 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
4 Hb_003055_070 0.106302085 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
5 Hb_000976_130 0.1065730827 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_007765_130 0.1068500528 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_001053_020 0.1071750825 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
8 Hb_000264_280 0.1072510858 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_005181_120 0.1082385778 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_007982_040 0.1083406126 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_002374_450 0.1088224535 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_000516_080 0.1103305599 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
13 Hb_005116_100 0.1107099329 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
14 Hb_004346_040 0.1142773106 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
15 Hb_000679_080 0.1144119523 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
16 Hb_010098_040 0.116933313 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
17 Hb_008616_040 0.1170665847 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
18 Hb_001649_030 0.1175789213 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
19 Hb_000042_050 0.1180473799 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
20 Hb_000933_110 0.1224236772 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_100 Hb_000005_100 Hb_004223_270 Hb_004223_270 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_003055_070 Hb_003055_070 Hb_000005_100--Hb_003055_070 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_000334_050 Hb_000334_050 Hb_004223_270--Hb_000334_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_001865_010 Hb_001865_010 Hb_022425_050--Hb_001865_010 Hb_005731_100 Hb_005731_100 Hb_022425_050--Hb_005731_100 Hb_022425_050--Hb_000334_050 Hb_001124_140 Hb_001124_140 Hb_022425_050--Hb_001124_140 Hb_001969_130 Hb_001969_130 Hb_022425_050--Hb_001969_130 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_003055_070--Hb_004223_270 Hb_008616_040 Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_000976_130--Hb_001053_020 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_007765_130--Hb_000093_140 Hb_001053_020--Hb_004242_170 Hb_001053_020--Hb_000042_050 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00959 16.5625 35.3682 20.5169 4.02519 3.75131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60036 5.34232 2.08024 9.6528 54.9125

CAGE analysis