Hb_000042_050

Information

Type -
Description -
Location Contig42: 63942-67887
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12440g
description POPTRDRAFT_232027; hypothetical protein
nr
ID XP_012070627.1
description PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
swissprot
ID Q2KIY1
description Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3
trembl
ID A0A067L495
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00681 PE=4 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal membrane 22 kda family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41454: 66618-67189 , PASA_asmbl_41455: 63960-67776 , PASA_asmbl_41456: 63490-67508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_050 0.0 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
2 Hb_002675_080 0.0578831515 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
3 Hb_001053_020 0.0821282874 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
4 Hb_007765_130 0.0937400463 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
5 Hb_000099_170 0.113131002 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
6 Hb_003175_070 0.1141893586 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
7 Hb_003849_160 0.1146456933 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
8 Hb_002026_030 0.1160692646 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_006916_030 0.1174190939 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_000005_100 0.1180473799 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_003582_090 0.1185171156 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
12 Hb_004242_170 0.1189926245 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
13 Hb_002374_450 0.1191519795 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
14 Hb_004346_040 0.1234095278 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
15 Hb_000414_080 0.1249218224 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_024677_010 0.1262989858 - - superoxide dismutase [fe], putative [Ricinus communis]
17 Hb_007982_040 0.1264189502 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_001348_090 0.1267516417 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
19 Hb_000906_070 0.1274743841 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
20 Hb_000445_370 0.1288046769 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_050 Hb_000042_050 Hb_002675_080 Hb_002675_080 Hb_000042_050--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_000042_050--Hb_001053_020 Hb_007765_130 Hb_007765_130 Hb_000042_050--Hb_007765_130 Hb_000099_170 Hb_000099_170 Hb_000042_050--Hb_000099_170 Hb_003175_070 Hb_003175_070 Hb_000042_050--Hb_003175_070 Hb_003849_160 Hb_003849_160 Hb_000042_050--Hb_003849_160 Hb_002675_080--Hb_000099_170 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_004242_170 Hb_004242_170 Hb_001053_020--Hb_004242_170 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_071079_020 Hb_071079_020 Hb_000099_170--Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_000099_170--Hb_000108_150 Hb_000322_030 Hb_000322_030 Hb_000099_170--Hb_000322_030 Hb_005181_120 Hb_005181_120 Hb_000099_170--Hb_005181_120 Hb_000061_250 Hb_000061_250 Hb_000099_170--Hb_000061_250 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_004545_080 Hb_004545_080 Hb_003175_070--Hb_004545_080 Hb_029552_020 Hb_029552_020 Hb_003849_160--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_003849_160--Hb_000529_130 Hb_001999_320 Hb_001999_320 Hb_003849_160--Hb_001999_320 Hb_009078_020 Hb_009078_020 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.43039 36.1539 76.8956 60.1307 14.0616 15.5891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58783 3.1111 4.5241 17.5567 103.449

CAGE analysis