Hb_001053_020

Information

Type -
Description -
Location Contig1053: 7639-14734
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06530g
description carotenoid cleavage dioxygenase 1 family protein
nr
ID ADN65332.1
description carotenoid cleavage dioxygenase 1 [Manihot esculenta]
swissprot
ID Q8LP17
description Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1
trembl
ID E2DQG6
description Carotenoid cleavage dioxygenase 1 OS=Manihot esculenta GN=CCD1 PE=2 SV=1
Gene Ontology
ID GO:0005774
description carotenoid cleavage dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01774: 7685-15503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_020 0.0 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
2 Hb_004242_170 0.0736484433 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
3 Hb_000042_050 0.0821282874 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
4 Hb_000441_050 0.0890094496 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
5 Hb_000976_130 0.0963687204 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_001252_030 0.0987309174 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
7 Hb_009692_040 0.0999758689 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005977_060 0.1010308302 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007982_040 0.1019573418 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_000005_100 0.1071750825 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_002675_080 0.1082154424 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
12 Hb_000445_370 0.1111733513 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
13 Hb_007765_130 0.1126141914 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
14 Hb_012799_190 0.1126265698 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
15 Hb_071079_020 0.1143091651 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_008616_040 0.1157831958 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
17 Hb_000516_080 0.116569895 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
18 Hb_002374_450 0.1182768815 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_001677_040 0.1184125802 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
20 Hb_001348_090 0.1190923799 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001053_020 Hb_001053_020 Hb_004242_170 Hb_004242_170 Hb_001053_020--Hb_004242_170 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040 Hb_004242_170--Hb_000441_050 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_004242_170--Hb_009692_040 Hb_002675_080 Hb_002675_080 Hb_000042_050--Hb_002675_080 Hb_007765_130 Hb_007765_130 Hb_000042_050--Hb_007765_130 Hb_000099_170 Hb_000099_170 Hb_000042_050--Hb_000099_170 Hb_003175_070 Hb_003175_070 Hb_000042_050--Hb_003175_070 Hb_003849_160 Hb_003849_160 Hb_000042_050--Hb_003849_160 Hb_000441_050--Hb_005977_060 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_008616_040 Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_000103_230 Hb_000103_230 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_020141_030 Hb_020141_030 Hb_001252_030--Hb_020141_030 Hb_000787_210 Hb_000787_210 Hb_001252_030--Hb_000787_210 Hb_001252_030--Hb_005977_060 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_009692_040--Hb_005977_060 Hb_009692_040--Hb_000441_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35225 31.6125 67.9407 65.222 14.6293 11.9806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.48649 3.83427 5.13102 23.1067 133.273

CAGE analysis