Hb_000976_130

Information

Type -
Description -
Location Contig976: 135910-137467
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43020g
description hypothetical protein
nr
ID XP_012087405.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067JQJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22648 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable boi-related e3 ubiquitin-protein ligase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64059: 135893-137389
cDNA
(Sanger)
(ID:Location)		 034_H06.ab1: 136352-137387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_130 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
2 Hb_008616_040 0.0791421211 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
3 Hb_001053_020 0.0963687204 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
4 Hb_000005_100 0.1065730827 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
5 Hb_001250_020 0.1080208719 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
6 Hb_004242_170 0.1116723376 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
7 Hb_012799_190 0.1163894023 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
8 Hb_003207_030 0.117138114 - - hypothetical protein VITISV_027754 [Vitis vinifera]
9 Hb_001109_160 0.11761897 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002960_040 0.1202800979 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
11 Hb_065525_070 0.1208621601 - - unnamed protein product [Homo sapiens]
12 Hb_006916_030 0.1255392062 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
13 Hb_007982_040 0.1270862786 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_018043_020 0.1277380817 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
15 Hb_021409_190 0.1285345053 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
16 Hb_010984_010 0.1289039004 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_003029_140 0.1294235329 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
18 Hb_009692_040 0.1313347405 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000441_050 0.1326942313 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
20 Hb_002783_070 0.1351906608 - - PREDICTED: endoplasmin homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000976_130 Hb_000976_130 Hb_008616_040 Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_018043_020 Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_008616_040--Hb_001250_020 Hb_003029_140 Hb_003029_140 Hb_008616_040--Hb_003029_140 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_001053_020--Hb_004242_170 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040 Hb_004223_270 Hb_004223_270 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_003055_070 Hb_003055_070 Hb_000005_100--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_000005_100--Hb_001053_020 Hb_001250_020--Hb_018043_020 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_001250_020--Hb_010984_010 Hb_004242_170--Hb_000441_050 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_004242_170--Hb_009692_040 Hb_012799_190--Hb_004242_170 Hb_000834_080 Hb_000834_080 Hb_012799_190--Hb_000834_080 Hb_012799_190--Hb_001053_020 Hb_000336_200 Hb_000336_200 Hb_012799_190--Hb_000336_200 Hb_012799_190--Hb_000762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85178 15.384 24.5892 21.8788 9.07371 3.81774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79152 4.33572 1.68447 11.1788 64.1547

CAGE analysis