Hb_009692_040

Information

Type -
Description -
Location Contig9692: 30777-36963
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04370g
description POPTRDRAFT_801794; hypothetical protein
nr
ID XP_012085955.1
description PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID F4J264
description Peptide chain release factor PrfB3, chloroplastic OS=Arabidopsis thaliana GN=PRFB3 PE=2 SV=1
trembl
ID A0A067JQK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22452 PE=4 SV=1
Gene Ontology
ID GO:0016149
description peptide chain release factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63930: 30747-35297 , PASA_asmbl_63931: 35316-36923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009692_040 0.0 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_007982_040 0.0857318981 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
3 Hb_032631_030 0.0905312841 - - phosphatidic acid phosphatase, putative [Ricinus communis]
4 Hb_004242_170 0.0957709237 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
5 Hb_001053_020 0.0999758689 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
6 Hb_005977_060 0.1002665554 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000441_050 0.1021425977 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
8 Hb_010721_020 0.1109610122 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
9 Hb_000193_220 0.116822214 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
10 Hb_001252_030 0.1230779287 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
11 Hb_001907_080 0.1233811308 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
12 Hb_000679_080 0.1240942183 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
13 Hb_000118_090 0.1252140138 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_002960_040 0.1252165875 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
15 Hb_001365_030 0.1253026114 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
16 Hb_001597_020 0.1261970414 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
17 Hb_005181_120 0.1266699002 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000108_150 0.1285019827 - - alpha/beta hydrolase, putative [Ricinus communis]
19 Hb_002044_160 0.1294774765 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
20 Hb_000976_130 0.1313347405 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009692_040 Hb_009692_040 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_009692_040--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_007982_040--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_007982_040--Hb_010098_040 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_000193_220 Hb_000193_220 Hb_007982_040--Hb_000193_220 Hb_000516_080 Hb_000516_080 Hb_007982_040--Hb_000516_080 Hb_000108_150 Hb_000108_150 Hb_032631_030--Hb_000108_150 Hb_172426_060 Hb_172426_060 Hb_032631_030--Hb_172426_060 Hb_000061_250 Hb_000061_250 Hb_032631_030--Hb_000061_250 Hb_002662_110 Hb_002662_110 Hb_032631_030--Hb_002662_110 Hb_032631_030--Hb_000441_050 Hb_004242_170--Hb_000441_050 Hb_004242_170--Hb_001053_020 Hb_004242_170--Hb_000108_150 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_005977_060--Hb_000441_050 Hb_005276_070 Hb_005276_070 Hb_005977_060--Hb_005276_070 Hb_001365_020 Hb_001365_020 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11543 2.00092 7.89821 5.78728 1.33342 0.680183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0643 0.195361 0.260992 2.49942 14.8734

CAGE analysis