Hb_001252_030

Information

Type -
Description -
Location Contig1252: 23523-29515
Sequence    

Annotation

kegg
ID rcu:RCOM_1481460
description Serine/threonine-protein kinase Nek8, putative
nr
ID XP_002524221.1
description Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SE02
description Serine/threonine-protein kinase Nek8, putative OS=Ricinus communis GN=RCOM_1481460 PE=4 SV=1
Gene Ontology
ID GO:0016301
description regulator of chromosome condensation repeat-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07706: 28120-28326 , PASA_asmbl_07707: 23697-29573 , PASA_asmbl_07708: 28504-28916 , PASA_asmbl_07709: 23697-27289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_030 0.0 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
2 Hb_001053_020 0.0987309174 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
3 Hb_000103_230 0.1097463767 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
4 Hb_003849_070 0.1131714158 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
5 Hb_020141_030 0.1149436873 - - solanesyl diphosphate synthase, putative [Ricinus communis]
6 Hb_000787_210 0.1156803564 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005977_060 0.1181921035 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000208_270 0.1196082975 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
9 Hb_000056_110 0.1202396053 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
10 Hb_000679_080 0.1210849261 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
11 Hb_009692_040 0.1230779287 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001677_040 0.1276711664 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
13 Hb_004242_170 0.1292530749 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
14 Hb_034507_050 0.1319379193 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
15 Hb_000002_300 0.1328448849 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
16 Hb_000441_050 0.1331669143 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
17 Hb_002960_040 0.1346785982 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
18 Hb_002662_110 0.1357804223 - - Kinesin heavy chain, putative [Ricinus communis]
19 Hb_003416_020 0.135910992 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
20 Hb_011649_010 0.1368717049 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_030 Hb_001252_030 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_000103_230 Hb_000103_230 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_020141_030 Hb_020141_030 Hb_001252_030--Hb_020141_030 Hb_000787_210 Hb_000787_210 Hb_001252_030--Hb_000787_210 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_001053_020--Hb_004242_170 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040 Hb_000103_230--Hb_000787_210 Hb_000103_230--Hb_020141_030 Hb_000130_140 Hb_000130_140 Hb_000103_230--Hb_000130_140 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000208_270 Hb_000208_270 Hb_000103_230--Hb_000208_270 Hb_016924_010 Hb_016924_010 Hb_003849_070--Hb_016924_010 Hb_000005_370 Hb_000005_370 Hb_003849_070--Hb_000005_370 Hb_032631_020 Hb_032631_020 Hb_003849_070--Hb_032631_020 Hb_001999_070 Hb_001999_070 Hb_003849_070--Hb_001999_070 Hb_003849_070--Hb_020141_030 Hb_020141_030--Hb_000208_270 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_000787_210--Hb_000208_270 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_005977_060--Hb_000441_050 Hb_005276_070 Hb_005276_070 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_005977_060--Hb_009692_040 Hb_001365_020 Hb_001365_020 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.914 16.5797 45.8875 46.1959 8.21954 4.66242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41886 0.478438 2.18605 11.1866 93.2245

CAGE analysis