Hb_000130_140

Information

Type transcription factor
Description TF Family: PHD
Location Contig130: 94562-103511
Sequence    

Annotation

kegg
ID rcu:RCOM_1521910
description DNA binding protein, putative
nr
ID XP_012078575.1
description PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KBV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14726 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08887: 78451-95471 , PASA_asmbl_08889: 96868-101148 , PASA_asmbl_08890: 101152-101999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_140 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
2 Hb_000392_210 0.1048004816 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
3 Hb_000083_080 0.1086022737 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
4 Hb_016924_010 0.1191245622 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000103_230 0.1195849 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
6 Hb_001100_070 0.1218321385 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000627_050 0.1235949972 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
8 Hb_010222_060 0.1263973789 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000977_020 0.1282909134 - - beta-hexosaminidase, putative [Ricinus communis]
10 Hb_000787_210 0.1290622426 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003145_010 0.1295492059 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
12 Hb_001051_010 0.1300591358 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_000212_410 0.1301041871 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
14 Hb_001417_060 0.1316986241 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_002246_030 0.1320566718 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_001098_040 0.132160415 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
17 Hb_000318_010 0.1336204517 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
18 Hb_000008_070 0.1337501282 - - kinase, putative [Ricinus communis]
19 Hb_005694_160 0.1339408396 - - conserved hypothetical protein [Ricinus communis]
20 Hb_102179_010 0.1343103301 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_140 Hb_000130_140 Hb_000392_210 Hb_000392_210 Hb_000130_140--Hb_000392_210 Hb_000083_080 Hb_000083_080 Hb_000130_140--Hb_000083_080 Hb_016924_010 Hb_016924_010 Hb_000130_140--Hb_016924_010 Hb_000103_230 Hb_000103_230 Hb_000130_140--Hb_000103_230 Hb_001100_070 Hb_001100_070 Hb_000130_140--Hb_001100_070 Hb_000627_050 Hb_000627_050 Hb_000130_140--Hb_000627_050 Hb_000152_530 Hb_000152_530 Hb_000392_210--Hb_000152_530 Hb_010222_060 Hb_010222_060 Hb_000392_210--Hb_010222_060 Hb_003097_220 Hb_003097_220 Hb_000392_210--Hb_003097_220 Hb_031862_120 Hb_031862_120 Hb_000392_210--Hb_031862_120 Hb_002713_060 Hb_002713_060 Hb_000392_210--Hb_002713_060 Hb_003580_050 Hb_003580_050 Hb_000083_080--Hb_003580_050 Hb_000417_050 Hb_000417_050 Hb_000083_080--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_000083_080--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_000083_080--Hb_002662_110 Hb_001936_190 Hb_001936_190 Hb_000083_080--Hb_001936_190 Hb_029223_010 Hb_029223_010 Hb_016924_010--Hb_029223_010 Hb_003195_080 Hb_003195_080 Hb_016924_010--Hb_003195_080 Hb_000270_640 Hb_000270_640 Hb_016924_010--Hb_000270_640 Hb_003145_010 Hb_003145_010 Hb_016924_010--Hb_003145_010 Hb_030827_010 Hb_030827_010 Hb_016924_010--Hb_030827_010 Hb_069696_020 Hb_069696_020 Hb_016924_010--Hb_069696_020 Hb_000787_210 Hb_000787_210 Hb_000103_230--Hb_000787_210 Hb_001252_030 Hb_001252_030 Hb_000103_230--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000103_230--Hb_020141_030 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000208_270 Hb_000208_270 Hb_000103_230--Hb_000208_270 Hb_001289_010 Hb_001289_010 Hb_001100_070--Hb_001289_010 Hb_009393_090 Hb_009393_090 Hb_001100_070--Hb_009393_090 Hb_000818_090 Hb_000818_090 Hb_001100_070--Hb_000818_090 Hb_000718_060 Hb_000718_060 Hb_001100_070--Hb_000718_060 Hb_000617_330 Hb_000617_330 Hb_001100_070--Hb_000617_330 Hb_007270_020 Hb_007270_020 Hb_001100_070--Hb_007270_020 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_000627_050--Hb_007270_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105129 1.04411 2.49851 2.86476 0.0437226 0.208168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.491161 4.2242

CAGE analysis