Hb_000392_210

Information

Type transcription factor
Description TF Family: TCP
Location Contig392: 203506-204687
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04600g
description hypothetical protein
nr
ID XP_006384036.1
description hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
swissprot
ID Q93Z00
description Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1
trembl
ID U5GE74
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04600g PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tcp14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_210 0.0 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
2 Hb_000130_140 0.1048004816 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
3 Hb_000152_530 0.1146333267 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
4 Hb_010222_060 0.1231111626 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003097_220 0.1250627737 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
6 Hb_031862_120 0.1289033286 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
7 Hb_002713_060 0.1296132884 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
8 Hb_000395_230 0.1312018926 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
9 Hb_000787_210 0.1341798436 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000056_110 0.1376102158 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
11 Hb_009522_020 0.1404762818 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
12 Hb_034507_050 0.1410819642 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
13 Hb_001296_060 0.1417477468 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
14 Hb_005057_030 0.1441058147 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
15 Hb_000120_480 0.1452900769 - - -
16 Hb_005723_090 0.1460508197 - - conserved hypothetical protein [Ricinus communis]
17 Hb_016924_010 0.1462174327 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000271_130 0.148881803 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
19 Hb_020141_030 0.1489200727 - - solanesyl diphosphate synthase, putative [Ricinus communis]
20 Hb_000103_230 0.1489687592 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000392_210 Hb_000392_210 Hb_000130_140 Hb_000130_140 Hb_000392_210--Hb_000130_140 Hb_000152_530 Hb_000152_530 Hb_000392_210--Hb_000152_530 Hb_010222_060 Hb_010222_060 Hb_000392_210--Hb_010222_060 Hb_003097_220 Hb_003097_220 Hb_000392_210--Hb_003097_220 Hb_031862_120 Hb_031862_120 Hb_000392_210--Hb_031862_120 Hb_002713_060 Hb_002713_060 Hb_000392_210--Hb_002713_060 Hb_000083_080 Hb_000083_080 Hb_000130_140--Hb_000083_080 Hb_016924_010 Hb_016924_010 Hb_000130_140--Hb_016924_010 Hb_000103_230 Hb_000103_230 Hb_000130_140--Hb_000103_230 Hb_001100_070 Hb_001100_070 Hb_000130_140--Hb_001100_070 Hb_000627_050 Hb_000627_050 Hb_000130_140--Hb_000627_050 Hb_002119_110 Hb_002119_110 Hb_000152_530--Hb_002119_110 Hb_000008_070 Hb_000008_070 Hb_000152_530--Hb_000008_070 Hb_000152_530--Hb_000130_140 Hb_010620_030 Hb_010620_030 Hb_000152_530--Hb_010620_030 Hb_000056_110 Hb_000056_110 Hb_000152_530--Hb_000056_110 Hb_013394_120 Hb_013394_120 Hb_010222_060--Hb_013394_120 Hb_014700_030 Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_009522_020 Hb_009522_020 Hb_010222_060--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_010222_060--Hb_132840_170 Hb_010222_060--Hb_002713_060 Hb_006355_060 Hb_006355_060 Hb_003097_220--Hb_006355_060 Hb_002613_040 Hb_002613_040 Hb_003097_220--Hb_002613_040 Hb_114917_010 Hb_114917_010 Hb_003097_220--Hb_114917_010 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_143871_010 Hb_143871_010 Hb_031862_120--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_002713_060--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.803527 4.89871 5.65928 10.9744 0.24077 0.434961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.62767 16.53

CAGE analysis