Hb_000083_080

Information

Type -
Description -
Location Contig83: 181755-183279
Sequence    

Annotation

kegg
ID rcu:RCOM_0884940
description hypothetical protein
nr
ID XP_012085488.1
description PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K343
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17823 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59774: 181560-183494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_080 0.0 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
2 Hb_000130_140 0.1086022737 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
3 Hb_003580_050 0.1202161028 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
4 Hb_000417_050 0.1216464653 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
5 Hb_000333_030 0.1304834545 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_002662_110 0.1329586438 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_001936_190 0.1329751946 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
8 Hb_004218_200 0.1340794585 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_001357_050 0.1352617338 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
10 Hb_003416_020 0.1381523801 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
11 Hb_093077_010 0.1388654375 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
12 Hb_002078_390 0.1398008558 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
13 Hb_004330_020 0.1402052144 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
14 Hb_002217_360 0.141262268 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
15 Hb_002869_060 0.1444581858 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
16 Hb_000922_160 0.1449003242 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
17 Hb_010222_040 0.1459427458 - - PREDICTED: kinesin-2 [Jatropha curcas]
18 Hb_007765_130 0.1476368387 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
19 Hb_004531_170 0.1477123869 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
20 Hb_001677_040 0.1488944448 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_080 Hb_000083_080 Hb_000130_140 Hb_000130_140 Hb_000083_080--Hb_000130_140 Hb_003580_050 Hb_003580_050 Hb_000083_080--Hb_003580_050 Hb_000417_050 Hb_000417_050 Hb_000083_080--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_000083_080--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_000083_080--Hb_002662_110 Hb_001936_190 Hb_001936_190 Hb_000083_080--Hb_001936_190 Hb_000392_210 Hb_000392_210 Hb_000130_140--Hb_000392_210 Hb_016924_010 Hb_016924_010 Hb_000130_140--Hb_016924_010 Hb_000103_230 Hb_000103_230 Hb_000130_140--Hb_000103_230 Hb_001100_070 Hb_001100_070 Hb_000130_140--Hb_001100_070 Hb_000627_050 Hb_000627_050 Hb_000130_140--Hb_000627_050 Hb_028008_040 Hb_028008_040 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_000417_050--Hb_002662_110 Hb_001677_040 Hb_001677_040 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_000574_170 Hb_000574_170 Hb_000333_030--Hb_000574_170 Hb_010222_040 Hb_010222_040 Hb_000333_030--Hb_010222_040 Hb_002217_360 Hb_002217_360 Hb_000333_030--Hb_002217_360 Hb_000333_030--Hb_001677_040 Hb_000333_030--Hb_002662_110 Hb_002662_110--Hb_004994_330 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_000922_160 Hb_000922_160 Hb_001936_190--Hb_000922_160 Hb_001936_190--Hb_028008_040 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67962 5.92914 20.6121 22.0234 0.543014 3.02777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178786 0.196905 0 4.55525 24.2353

CAGE analysis