Hb_000574_170

Information

Type -
Description -
Location Contig574: 111826-118346
Sequence    

Annotation

kegg
ID tcc:TCM_027289
description Inorganic H pyrophosphatase family protein isoform 1
nr
ID XP_012073123.1
description PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
swissprot
ID P21616
description Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=4
trembl
ID A0A067KLM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06103 PE=3 SV=1
Gene Ontology
ID GO:0005739
description pyrophosphate-energized vacuolar membrane proton pump-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49549: 111828-118151 , PASA_asmbl_49551: 115786-115952
cDNA
(Sanger)
(ID:Location)		 027_G15.ab1: 117899-118129 , 041_N03.ab1: 111945-112438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_170 0.0 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
2 Hb_000333_030 0.0888548163 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_002217_360 0.1218409801 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
4 Hb_000482_120 0.1326998645 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
5 Hb_000959_130 0.1331956101 - - organic anion transporter, putative [Ricinus communis]
6 Hb_010222_040 0.1358146355 - - PREDICTED: kinesin-2 [Jatropha curcas]
7 Hb_010337_040 0.1375433535 - - -
8 Hb_001951_080 0.1427754282 - - O-acetyltransferase, putative [Ricinus communis]
9 Hb_003125_210 0.1442940984 - - Phospholipase C 4 precursor, putative [Ricinus communis]
10 Hb_000692_100 0.1469863235 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_002495_030 0.152495149 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
12 Hb_022149_020 0.152770057 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000071_160 0.1570242429 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
14 Hb_001677_040 0.1583223151 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
15 Hb_003029_120 0.158454304 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
16 Hb_001946_200 0.1588663535 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
17 Hb_009113_080 0.1590837347 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
18 Hb_003086_030 0.1607159132 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_000453_020 0.1612115895 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_000429_160 0.1614157367 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_170 Hb_000574_170 Hb_000333_030 Hb_000333_030 Hb_000574_170--Hb_000333_030 Hb_002217_360 Hb_002217_360 Hb_000574_170--Hb_002217_360 Hb_000482_120 Hb_000482_120 Hb_000574_170--Hb_000482_120 Hb_000959_130 Hb_000959_130 Hb_000574_170--Hb_000959_130 Hb_010222_040 Hb_010222_040 Hb_000574_170--Hb_010222_040 Hb_010337_040 Hb_010337_040 Hb_000574_170--Hb_010337_040 Hb_000333_030--Hb_010222_040 Hb_000333_030--Hb_002217_360 Hb_001677_040 Hb_001677_040 Hb_000333_030--Hb_001677_040 Hb_000083_080 Hb_000083_080 Hb_000333_030--Hb_000083_080 Hb_002662_110 Hb_002662_110 Hb_000333_030--Hb_002662_110 Hb_002217_360--Hb_010222_040 Hb_000834_180 Hb_000834_180 Hb_002217_360--Hb_000834_180 Hb_001946_200 Hb_001946_200 Hb_002217_360--Hb_001946_200 Hb_093077_010 Hb_093077_010 Hb_002217_360--Hb_093077_010 Hb_000453_020 Hb_000453_020 Hb_000482_120--Hb_000453_020 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000482_120--Hb_010337_040 Hb_001404_070 Hb_001404_070 Hb_000959_130--Hb_001404_070 Hb_134014_010 Hb_134014_010 Hb_000959_130--Hb_134014_010 Hb_006615_230 Hb_006615_230 Hb_000959_130--Hb_006615_230 Hb_012395_050 Hb_012395_050 Hb_000959_130--Hb_012395_050 Hb_189003_070 Hb_189003_070 Hb_000959_130--Hb_189003_070 Hb_000856_200 Hb_000856_200 Hb_010222_040--Hb_000856_200 Hb_010557_020 Hb_010557_020 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_144449_010 Hb_144449_010 Hb_010222_040--Hb_144449_010 Hb_001318_100 Hb_001318_100 Hb_010222_040--Hb_001318_100 Hb_010337_040--Hb_000453_020 Hb_000327_320 Hb_000327_320 Hb_010337_040--Hb_000327_320 Hb_000395_310 Hb_000395_310 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221429 5.5957 13.8009 31.6563 2.22044 2.52297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.052622 0.0207052 0.614818 6.66902 21.2831

CAGE analysis