Hb_000453_020

Information

Type -
Description -
Location Contig453: 14525-17336
Sequence    

Annotation

kegg
ID rcu:RCOM_1257640
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002531439.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZM0
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1257640 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43244: 16770-17034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_020 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000482_120 0.1195830925 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
3 Hb_003029_120 0.1220355587 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
4 Hb_010337_040 0.1250939939 - - -
5 Hb_003488_040 0.1366763308 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
6 Hb_002184_080 0.1404992902 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_012539_100 0.143561878 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
8 Hb_068804_180 0.1437823203 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
9 Hb_006816_490 0.1490522368 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 21 [Jatropha curcas]
10 Hb_002518_220 0.1559175278 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
11 Hb_001946_200 0.1575305289 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
12 Hb_000679_250 0.1578124155 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
13 Hb_000742_130 0.1589342571 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
14 Hb_043630_030 0.1591542952 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
15 Hb_007221_040 0.159552442 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
16 Hb_000574_170 0.1612115895 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
17 Hb_007483_120 0.1632366605 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_154038_040 0.1637661189 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_004881_010 0.1656996321 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
20 Hb_032920_030 0.1663073244 - - signal transducer, putative [Ricinus communis]

Gene co-expression network

sample Hb_000453_020 Hb_000453_020 Hb_000482_120 Hb_000482_120 Hb_000453_020--Hb_000482_120 Hb_003029_120 Hb_003029_120 Hb_000453_020--Hb_003029_120 Hb_010337_040 Hb_010337_040 Hb_000453_020--Hb_010337_040 Hb_003488_040 Hb_003488_040 Hb_000453_020--Hb_003488_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_000482_120--Hb_010337_040 Hb_001946_200 Hb_001946_200 Hb_003029_120--Hb_001946_200 Hb_070498_010 Hb_070498_010 Hb_003029_120--Hb_070498_010 Hb_001195_550 Hb_001195_550 Hb_003029_120--Hb_001195_550 Hb_012404_020 Hb_012404_020 Hb_003029_120--Hb_012404_020 Hb_000327_320 Hb_000327_320 Hb_010337_040--Hb_000327_320 Hb_010337_040--Hb_000574_170 Hb_000395_310 Hb_000395_310 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010 Hb_001268_150 Hb_001268_150 Hb_003488_040--Hb_001268_150 Hb_002973_050 Hb_002973_050 Hb_003488_040--Hb_002973_050 Hb_068804_180 Hb_068804_180 Hb_003488_040--Hb_068804_180 Hb_001950_100 Hb_001950_100 Hb_003488_040--Hb_001950_100 Hb_002168_070 Hb_002168_070 Hb_003488_040--Hb_002168_070 Hb_000679_250 Hb_000679_250 Hb_002184_080--Hb_000679_250 Hb_002518_220 Hb_002518_220 Hb_002184_080--Hb_002518_220 Hb_169893_010 Hb_169893_010 Hb_002184_080--Hb_169893_010 Hb_006816_490 Hb_006816_490 Hb_002184_080--Hb_006816_490 Hb_035995_010 Hb_035995_010 Hb_002184_080--Hb_035995_010 Hb_002205_150 Hb_002205_150 Hb_012539_100--Hb_002205_150 Hb_004634_030 Hb_004634_030 Hb_012539_100--Hb_004634_030 Hb_142026_010 Hb_142026_010 Hb_012539_100--Hb_142026_010 Hb_106089_010 Hb_106089_010 Hb_012539_100--Hb_106089_010 Hb_002902_040 Hb_002902_040 Hb_012539_100--Hb_002902_040 Hb_007221_040 Hb_007221_040 Hb_012539_100--Hb_007221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.411636 0.622622 1.30655 0.020462 0.134591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.173883 0.563489

CAGE analysis