Hb_000679_250

Information

Type -
Description -
Location Contig679: 169892-173915
Sequence    

Annotation

kegg
ID rcu:RCOM_0923940
description hypothetical protein
nr
ID XP_012076555.1
description PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07159 PE=4 SV=1
Gene Ontology
ID GO:0003712
description histone acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53706: 172405-172604 , PASA_asmbl_53707: 172611-174060 , PASA_asmbl_53708: 172611-173801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_250 0.0 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
2 Hb_015934_080 0.1068873943 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
3 Hb_002171_020 0.1148720014 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_033312_070 0.1230626113 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
5 Hb_002184_080 0.1239372214 - - triacylglycerol lipase, putative [Ricinus communis]
6 Hb_000645_160 0.1242108784 - - protein translocase, putative [Ricinus communis]
7 Hb_004558_060 0.1265179727 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
8 Hb_009189_100 0.1267672316 - - PREDICTED: patellin-6 [Jatropha curcas]
9 Hb_035995_010 0.1273218005 - - -
10 Hb_178049_010 0.1275532678 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_002918_270 0.1298947701 - - PREDICTED: protein E6-like [Populus euphratica]
12 Hb_001085_190 0.1300861528 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_000735_020 0.1308671807 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_155444_010 0.1309703959 - - -
15 Hb_002701_030 0.1320336546 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_000568_020 0.1332769626 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
17 Hb_003893_180 0.1335847139 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
18 Hb_007290_050 0.1338763279 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
19 Hb_002518_020 0.1340481034 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
20 Hb_000742_130 0.1341400722 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_250 Hb_000679_250 Hb_015934_080 Hb_015934_080 Hb_000679_250--Hb_015934_080 Hb_002171_020 Hb_002171_020 Hb_000679_250--Hb_002171_020 Hb_033312_070 Hb_033312_070 Hb_000679_250--Hb_033312_070 Hb_002184_080 Hb_002184_080 Hb_000679_250--Hb_002184_080 Hb_000645_160 Hb_000645_160 Hb_000679_250--Hb_000645_160 Hb_004558_060 Hb_004558_060 Hb_000679_250--Hb_004558_060 Hb_009189_100 Hb_009189_100 Hb_015934_080--Hb_009189_100 Hb_015934_080--Hb_002171_020 Hb_015934_080--Hb_033312_070 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_007290_050 Hb_007290_050 Hb_015934_080--Hb_007290_050 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190 Hb_002171_020--Hb_009189_100 Hb_000329_720 Hb_000329_720 Hb_002171_020--Hb_000329_720 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_002171_020--Hb_004558_060 Hb_006788_110 Hb_006788_110 Hb_033312_070--Hb_006788_110 Hb_000735_020 Hb_000735_020 Hb_033312_070--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_033312_070--Hb_011918_070 Hb_012518_080 Hb_012518_080 Hb_033312_070--Hb_012518_080 Hb_001085_190 Hb_001085_190 Hb_033312_070--Hb_001085_190 Hb_002518_220 Hb_002518_220 Hb_002184_080--Hb_002518_220 Hb_169893_010 Hb_169893_010 Hb_002184_080--Hb_169893_010 Hb_006816_490 Hb_006816_490 Hb_002184_080--Hb_006816_490 Hb_000453_020 Hb_000453_020 Hb_002184_080--Hb_000453_020 Hb_035995_010 Hb_035995_010 Hb_002184_080--Hb_035995_010 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_001369_190 Hb_001369_190 Hb_004558_060--Hb_001369_190 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.576686 1.62116 3.76917 0.0281132 0.0951374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031965 0.0502949 0 0.532156 0.893602

CAGE analysis