Hb_000692_100

Information

Type -
Description -
Location Contig692: 94607-98755
Sequence    

Annotation

kegg
ID rcu:RCOM_1599390
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002510594.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q8RWL2
description Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2
trembl
ID B9R8F1
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1599390 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calcium-dependent protein kinase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54443: 94594-95697 , PASA_asmbl_54444: 96618-98084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_100 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000482_120 0.1216807299 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
3 Hb_004223_240 0.1248657314 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
4 Hb_001054_040 0.127975849 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
5 Hb_000617_330 0.1288152091 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
6 Hb_006570_090 0.1296798634 - - tubulin beta chain, putative [Ricinus communis]
7 Hb_001318_100 0.1316392874 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
8 Hb_003029_120 0.135350436 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
9 Hb_000429_160 0.1358263812 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
10 Hb_003125_210 0.1360235441 - - Phospholipase C 4 precursor, putative [Ricinus communis]
11 Hb_001951_080 0.1374667275 - - O-acetyltransferase, putative [Ricinus communis]
12 Hb_003266_090 0.1391291994 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
13 Hb_001322_100 0.1401334281 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
14 Hb_009113_080 0.1426010133 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
15 Hb_012404_020 0.1426778649 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001946_200 0.1432152144 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
17 Hb_143629_120 0.1443889139 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_003086_030 0.1452502114 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_000574_170 0.1469863235 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
20 Hb_000049_270 0.1473991661 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000692_100 Hb_000692_100 Hb_000482_120 Hb_000482_120 Hb_000692_100--Hb_000482_120 Hb_004223_240 Hb_004223_240 Hb_000692_100--Hb_004223_240 Hb_001054_040 Hb_001054_040 Hb_000692_100--Hb_001054_040 Hb_000617_330 Hb_000617_330 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_000453_020 Hb_000453_020 Hb_000482_120--Hb_000453_020 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_010337_040 Hb_010337_040 Hb_000482_120--Hb_010337_040 Hb_004223_240--Hb_000617_330 Hb_002890_330 Hb_002890_330 Hb_004223_240--Hb_002890_330 Hb_001289_010 Hb_001289_010 Hb_004223_240--Hb_001289_010 Hb_001638_340 Hb_001638_340 Hb_004223_240--Hb_001638_340 Hb_001322_100 Hb_001322_100 Hb_004223_240--Hb_001322_100 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_000617_330--Hb_001289_010 Hb_001100_070 Hb_001100_070 Hb_000617_330--Hb_001100_070 Hb_000718_060 Hb_000718_060 Hb_000617_330--Hb_000718_060 Hb_001794_040 Hb_001794_040 Hb_000617_330--Hb_001794_040 Hb_008221_200 Hb_008221_200 Hb_000617_330--Hb_008221_200 Hb_000012_350 Hb_000012_350 Hb_000617_330--Hb_000012_350 Hb_000049_270 Hb_000049_270 Hb_006570_090--Hb_000049_270 Hb_012807_150 Hb_012807_150 Hb_006570_090--Hb_012807_150 Hb_004007_070 Hb_004007_070 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_000023_110 Hb_000023_110 Hb_006570_090--Hb_000023_110 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_000659_040 Hb_000659_040 Hb_001318_100--Hb_000659_040 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_000856_200 Hb_000856_200 Hb_001318_100--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211948 1.44258 2.71957 4.94249 0.377681 0.094993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.02938 0 0.0435136 0.599296 2.61692

CAGE analysis