Hb_001322_100

Information

Type -
Description -
Location Contig1322: 83845-85402
Sequence    

Annotation

kegg
ID vvi:100249326
description hyoscyamine 6-dioxygenase
nr
ID XP_002279001.1
description PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
swissprot
ID P24397
description Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1
trembl
ID D7U768
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0013g00740 PE=3 SV=1
Gene Ontology
ID GO:0051213
description hyoscyamine 6-dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09264: 83785-83909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_100 0.0 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
2 Hb_004223_240 0.1268831499 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
3 Hb_000692_100 0.1401334281 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_001951_190 0.15967804 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
5 Hb_002890_330 0.1635347134 - - caspase, putative [Ricinus communis]
6 Hb_000827_020 0.1639406575 - - unnamed protein product [Coffea canephora]
7 Hb_003702_070 0.1659142241 - - unnamed protein product [Vitis vinifera]
8 Hb_007441_360 0.1667375049 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
9 Hb_003581_050 0.1693732083 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
10 Hb_014990_010 0.1718756567 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v100031791mg, partial [Citrus clementina]
11 Hb_003266_090 0.1724534128 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
12 Hb_002518_220 0.1743090348 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_000617_330 0.1755850105 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
14 Hb_143629_120 0.1760696885 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_001054_040 0.1775051778 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
16 Hb_004450_020 0.1793050735 - - serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_002053_190 0.1799729278 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
18 Hb_003399_110 0.1804044561 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000482_120 0.1821796193 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
20 Hb_007101_070 0.1852497318 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_100 Hb_001322_100 Hb_004223_240 Hb_004223_240 Hb_001322_100--Hb_004223_240 Hb_000692_100 Hb_000692_100 Hb_001322_100--Hb_000692_100 Hb_001951_190 Hb_001951_190 Hb_001322_100--Hb_001951_190 Hb_002890_330 Hb_002890_330 Hb_001322_100--Hb_002890_330 Hb_000827_020 Hb_000827_020 Hb_001322_100--Hb_000827_020 Hb_003702_070 Hb_003702_070 Hb_001322_100--Hb_003702_070 Hb_000617_330 Hb_000617_330 Hb_004223_240--Hb_000617_330 Hb_004223_240--Hb_002890_330 Hb_001289_010 Hb_001289_010 Hb_004223_240--Hb_001289_010 Hb_001638_340 Hb_001638_340 Hb_004223_240--Hb_001638_340 Hb_004223_240--Hb_000692_100 Hb_000482_120 Hb_000482_120 Hb_000692_100--Hb_000482_120 Hb_001054_040 Hb_001054_040 Hb_000692_100--Hb_001054_040 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_005245_140 Hb_005245_140 Hb_001951_190--Hb_005245_140 Hb_000479_060 Hb_000479_060 Hb_001951_190--Hb_000479_060 Hb_003266_090 Hb_003266_090 Hb_001951_190--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_001951_190--Hb_003581_050 Hb_000424_030 Hb_000424_030 Hb_001951_190--Hb_000424_030 Hb_003929_230 Hb_003929_230 Hb_001951_190--Hb_003929_230 Hb_002053_190 Hb_002053_190 Hb_002890_330--Hb_002053_190 Hb_002043_070 Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_001541_210 Hb_001541_210 Hb_002890_330--Hb_001541_210 Hb_002960_030 Hb_002960_030 Hb_002890_330--Hb_002960_030 Hb_001405_170 Hb_001405_170 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_003399_110 Hb_003399_110 Hb_000827_020--Hb_003399_110 Hb_000012_350 Hb_000012_350 Hb_000827_020--Hb_000012_350 Hb_000964_040 Hb_000964_040 Hb_000827_020--Hb_000964_040 Hb_001408_080 Hb_001408_080 Hb_000827_020--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_000827_020--Hb_012132_050 Hb_009785_030 Hb_009785_030 Hb_000827_020--Hb_009785_030 Hb_014990_010 Hb_014990_010 Hb_003702_070--Hb_014990_010 Hb_003702_070--Hb_000692_100 Hb_000462_190 Hb_000462_190 Hb_003702_070--Hb_000462_190 Hb_000417_020 Hb_000417_020 Hb_003702_070--Hb_000417_020 Hb_003702_070--Hb_000482_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0472194 0.581283 0.735114 1.33142 0.16568 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0377874 0 0.0910842 0.620289

CAGE analysis