Hb_003702_070

Information

Type -
Description -
Location Contig3702: 85505-86418
Sequence    

Annotation

kegg
ID vvi:100258321
description 50S ribosomal protein L34, chloroplastic
nr
ID CBI30669.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LP37
description 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1
trembl
ID D7TJJ7
description Ribosomal protein L34 OS=Vitis vinifera GN=VIT_10s0003g01080 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003702_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_014990_010 0.1349808295 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v100031791mg, partial [Citrus clementina]
3 Hb_000692_100 0.1508787919 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_000462_190 0.1633271224 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
5 Hb_001322_100 0.1659142241 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
6 Hb_000417_020 0.1740463948 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
7 Hb_000482_120 0.1759179748 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
8 Hb_007483_120 0.1790008587 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_001538_020 0.1835913971 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
10 Hb_001855_020 0.18426954 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
11 Hb_005724_040 0.187197322 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
12 Hb_000181_230 0.1884859859 - - copper ion binding protein, putative [Ricinus communis]
13 Hb_029142_040 0.1915859326 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
14 Hb_152980_020 0.1943590711 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
15 Hb_002685_160 0.1959752415 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_001269_400 0.196237182 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
17 Hb_002510_100 0.1969629385 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_000309_060 0.1983268484 - - hypothetical protein JCGZ_09609 [Jatropha curcas]
19 Hb_000003_580 0.1994643962 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002539_050 0.1996480145 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003702_070 Hb_003702_070 Hb_014990_010 Hb_014990_010 Hb_003702_070--Hb_014990_010 Hb_000692_100 Hb_000692_100 Hb_003702_070--Hb_000692_100 Hb_000462_190 Hb_000462_190 Hb_003702_070--Hb_000462_190 Hb_001322_100 Hb_001322_100 Hb_003702_070--Hb_001322_100 Hb_000417_020 Hb_000417_020 Hb_003702_070--Hb_000417_020 Hb_000482_120 Hb_000482_120 Hb_003702_070--Hb_000482_120 Hb_000654_050 Hb_000654_050 Hb_014990_010--Hb_000654_050 Hb_014990_010--Hb_000692_100 Hb_014990_010--Hb_001322_100 Hb_001054_040 Hb_001054_040 Hb_014990_010--Hb_001054_040 Hb_087427_010 Hb_087427_010 Hb_014990_010--Hb_087427_010 Hb_000692_100--Hb_000482_120 Hb_004223_240 Hb_004223_240 Hb_000692_100--Hb_004223_240 Hb_000692_100--Hb_001054_040 Hb_000617_330 Hb_000617_330 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_000329_010 Hb_000329_010 Hb_000462_190--Hb_000329_010 Hb_029142_040 Hb_029142_040 Hb_000462_190--Hb_029142_040 Hb_001769_070 Hb_001769_070 Hb_000462_190--Hb_001769_070 Hb_005545_110 Hb_005545_110 Hb_000462_190--Hb_005545_110 Hb_001138_070 Hb_001138_070 Hb_000462_190--Hb_001138_070 Hb_008175_050 Hb_008175_050 Hb_000462_190--Hb_008175_050 Hb_001322_100--Hb_004223_240 Hb_001322_100--Hb_000692_100 Hb_001951_190 Hb_001951_190 Hb_001322_100--Hb_001951_190 Hb_002890_330 Hb_002890_330 Hb_001322_100--Hb_002890_330 Hb_000827_020 Hb_000827_020 Hb_001322_100--Hb_000827_020 Hb_001538_020 Hb_001538_020 Hb_000417_020--Hb_001538_020 Hb_001269_520 Hb_001269_520 Hb_000417_020--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_000417_020--Hb_000251_050 Hb_000071_160 Hb_000071_160 Hb_000417_020--Hb_000071_160 Hb_002320_090 Hb_002320_090 Hb_000417_020--Hb_002320_090 Hb_000453_020 Hb_000453_020 Hb_000482_120--Hb_000453_020 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_010337_040 Hb_010337_040 Hb_000482_120--Hb_010337_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164312 0.796018 0.941829 2.21239 0.387388 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.588063 1.07909

CAGE analysis