Hb_002320_090

Information

Type -
Description -
Location Contig2320: 76138-79768
Sequence    

Annotation

kegg
ID rcu:RCOM_1299900
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012078865.1
description PREDICTED: endoglucanase 25-like [Jatropha curcas]
swissprot
ID Q38890
description Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1
trembl
ID A0A067K8M7
description Endoglucanase OS=Jatropha curcas GN=JCGZ_13392 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endo- -beta-glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24405: 76539-79760 , PASA_asmbl_24406: 77953-78063
cDNA
(Sanger)
(ID:Location)		 013_B06.ab1: 78908-79760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_090 0.0 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
2 Hb_000964_170 0.0743867542 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
3 Hb_006916_030 0.104485026 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
4 Hb_000270_710 0.1057198066 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
5 Hb_001266_120 0.1135545215 - - auxilin, putative [Ricinus communis]
6 Hb_003632_030 0.1290886802 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
7 Hb_001411_050 0.1294737001 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
8 Hb_001579_200 0.1321984837 - - nucleoredoxin, putative [Ricinus communis]
9 Hb_001140_180 0.1358134043 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
10 Hb_006846_080 0.1358737397 - - calnexin, putative [Ricinus communis]
11 Hb_001411_030 0.1373794912 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
12 Hb_010984_010 0.1399289247 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000984_140 0.141339684 - - PREDICTED: xylulose kinase [Jatropha curcas]
14 Hb_005288_110 0.1422326249 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
15 Hb_000445_370 0.1422897312 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
16 Hb_001109_160 0.1445936557 - - DNA binding protein, putative [Ricinus communis]
17 Hb_177343_010 0.1451622898 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
18 Hb_000167_040 0.1475130146 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
19 Hb_024570_040 0.1512529522 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
20 Hb_003490_050 0.1520021725 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002320_090 Hb_002320_090 Hb_000964_170 Hb_000964_170 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_000270_710 Hb_000270_710 Hb_002320_090--Hb_000270_710 Hb_001266_120 Hb_001266_120 Hb_002320_090--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050 Hb_000964_170--Hb_006916_030 Hb_000445_370 Hb_000445_370 Hb_000964_170--Hb_000445_370 Hb_000964_170--Hb_001411_050 Hb_001140_180 Hb_001140_180 Hb_000964_170--Hb_001140_180 Hb_000964_170--Hb_000270_710 Hb_001109_160 Hb_001109_160 Hb_006916_030--Hb_001109_160 Hb_006916_030--Hb_001140_180 Hb_006916_030--Hb_000445_370 Hb_008616_040 Hb_008616_040 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_000270_710--Hb_006916_030 Hb_000270_830 Hb_000270_830 Hb_000270_710--Hb_000270_830 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_005288_110 Hb_005288_110 Hb_001266_120--Hb_005288_110 Hb_024570_040 Hb_024570_040 Hb_001266_120--Hb_024570_040 Hb_001266_120--Hb_003632_030 Hb_085187_010 Hb_085187_010 Hb_001266_120--Hb_085187_010 Hb_177343_010 Hb_177343_010 Hb_001266_120--Hb_177343_010 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_001411_050--Hb_006916_030 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001411_050--Hb_001140_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8213 54.8351 77.0073 117.596 63.2183 36.8627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6235 5.86155 10.8724 79.5624 202.913

CAGE analysis