Hb_005288_110

Information

Type -
Description -
Location Contig5288: 58315-63209
Sequence    

Annotation

kegg
ID rcu:RCOM_0609600
description hypothetical protein
nr
ID XP_012089353.1
description PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47172: 59125-63165 , PASA_asmbl_47173: 59804-63169 , PASA_asmbl_47174: 58444-59741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_110 0.0 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
2 Hb_003777_250 0.1122477871 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
3 Hb_012165_020 0.1352947517 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
4 Hb_001266_120 0.1358580831 - - auxilin, putative [Ricinus communis]
5 Hb_003632_030 0.1375840095 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
6 Hb_004738_110 0.1384904682 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
7 Hb_002320_090 0.1422326249 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
8 Hb_002636_040 0.1506712279 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
9 Hb_022250_100 0.1520379148 - - calnexin, putative [Ricinus communis]
10 Hb_001675_050 0.1549062728 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
11 Hb_007313_100 0.1586631972 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
12 Hb_005063_080 0.1602427175 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_001408_030 0.1611389195 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
14 Hb_002740_190 0.1641071899 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
15 Hb_143629_060 0.1682271873 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
16 Hb_000172_350 0.1689586418 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
17 Hb_024570_040 0.1699840332 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
18 Hb_000964_170 0.170184328 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
19 Hb_010984_010 0.1707295055 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000599_230 0.1708869983 - - -

Gene co-expression network

sample Hb_005288_110 Hb_005288_110 Hb_003777_250 Hb_003777_250 Hb_005288_110--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_005288_110--Hb_012165_020 Hb_001266_120 Hb_001266_120 Hb_005288_110--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_005288_110--Hb_003632_030 Hb_004738_110 Hb_004738_110 Hb_005288_110--Hb_004738_110 Hb_002320_090 Hb_002320_090 Hb_005288_110--Hb_002320_090 Hb_006006_060 Hb_006006_060 Hb_003777_250--Hb_006006_060 Hb_001675_050 Hb_001675_050 Hb_003777_250--Hb_001675_050 Hb_005063_080 Hb_005063_080 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020 Hb_000328_050 Hb_000328_050 Hb_003777_250--Hb_000328_050 Hb_000599_230 Hb_000599_230 Hb_012165_020--Hb_000599_230 Hb_012165_020--Hb_001675_050 Hb_007313_100 Hb_007313_100 Hb_012165_020--Hb_007313_100 Hb_002681_080 Hb_002681_080 Hb_012165_020--Hb_002681_080 Hb_002276_070 Hb_002276_070 Hb_012165_020--Hb_002276_070 Hb_001266_120--Hb_002320_090 Hb_024570_040 Hb_024570_040 Hb_001266_120--Hb_024570_040 Hb_001266_120--Hb_003632_030 Hb_085187_010 Hb_085187_010 Hb_001266_120--Hb_085187_010 Hb_177343_010 Hb_177343_010 Hb_001266_120--Hb_177343_010 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_143629_060 Hb_143629_060 Hb_004738_110--Hb_143629_060 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_048141_030 Hb_048141_030 Hb_004738_110--Hb_048141_030 Hb_003058_020 Hb_003058_020 Hb_004738_110--Hb_003058_020 Hb_002053_110 Hb_002053_110 Hb_004738_110--Hb_002053_110 Hb_000964_170 Hb_000964_170 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_000270_710 Hb_000270_710 Hb_002320_090--Hb_000270_710 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.32474 4.41821 18.0714 20.7055 19.7891 15.4886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08394 1.10935 3.0138 12.8191 45.9257

CAGE analysis