Hb_000328_050

Information

Type -
Description -
Location Contig328: 95103-103641
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11300g
description POPTRDRAFT_825945; translation initiation factor 3 family protein
nr
ID XP_012071539.1
description PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
swissprot
ID B2IY66
description Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1
trembl
ID A0A067KUU8
description Translation initiation factor IF-3 OS=Jatropha curcas GN=JCGZ_04056 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34445: 95448-114584 , PASA_asmbl_34446: 95524-97234 , PASA_asmbl_34447: 96703-97212 , PASA_asmbl_34448: 97437-97888
cDNA
(Sanger)
(ID:Location)		 039_G20.ab1: 98069-114581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000328_050 0.0 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
2 Hb_000014_040 0.1234343635 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003642_010 0.1245958935 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_001584_340 0.1257363679 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
5 Hb_006006_060 0.1267345807 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
6 Hb_016219_010 0.1271757333 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
7 Hb_003777_250 0.1352738715 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
8 Hb_001051_050 0.1371369652 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000200_350 0.1390600967 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
10 Hb_004631_090 0.1446671797 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
11 Hb_016219_030 0.1465702533 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001080_070 0.1472055312 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
13 Hb_000116_190 0.1472718986 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000189_450 0.1496927385 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
15 Hb_008375_010 0.1517036339 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_023988_030 0.1524232729 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
17 Hb_000008_350 0.1532384318 - - -
18 Hb_004710_020 0.1535704214 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_009524_030 0.1542513071 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
20 Hb_002928_090 0.154581761 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]

Gene co-expression network

sample Hb_000328_050 Hb_000328_050 Hb_000014_040 Hb_000014_040 Hb_000328_050--Hb_000014_040 Hb_003642_010 Hb_003642_010 Hb_000328_050--Hb_003642_010 Hb_001584_340 Hb_001584_340 Hb_000328_050--Hb_001584_340 Hb_006006_060 Hb_006006_060 Hb_000328_050--Hb_006006_060 Hb_016219_010 Hb_016219_010 Hb_000328_050--Hb_016219_010 Hb_003777_250 Hb_003777_250 Hb_000328_050--Hb_003777_250 Hb_002928_090 Hb_002928_090 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_016219_030 Hb_016219_030 Hb_003642_010--Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_003642_010--Hb_000189_450 Hb_004631_090 Hb_004631_090 Hb_003642_010--Hb_004631_090 Hb_002955_020 Hb_002955_020 Hb_003642_010--Hb_002955_020 Hb_000107_590 Hb_000107_590 Hb_003642_010--Hb_000107_590 Hb_001584_340--Hb_000014_040 Hb_014497_060 Hb_014497_060 Hb_001584_340--Hb_014497_060 Hb_003052_030 Hb_003052_030 Hb_001584_340--Hb_003052_030 Hb_004046_030 Hb_004046_030 Hb_001584_340--Hb_004046_030 Hb_000739_210 Hb_000739_210 Hb_001584_340--Hb_000739_210 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_001105_040 Hb_001105_040 Hb_016219_010--Hb_001105_040 Hb_016219_010--Hb_016219_030 Hb_001578_020 Hb_001578_020 Hb_016219_010--Hb_001578_020 Hb_001951_060 Hb_001951_060 Hb_016219_010--Hb_001951_060 Hb_001301_280 Hb_001301_280 Hb_016219_010--Hb_001301_280 Hb_001242_120 Hb_001242_120 Hb_016219_010--Hb_001242_120 Hb_005288_110 Hb_005288_110 Hb_003777_250--Hb_005288_110 Hb_003777_250--Hb_006006_060 Hb_001675_050 Hb_001675_050 Hb_003777_250--Hb_001675_050 Hb_005063_080 Hb_005063_080 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.233256 0.238396 1.48592 2.46506 0.871443 1.3069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.772288 0.79419 0.426062 1.45148 3.50138

CAGE analysis