Hb_003052_030

Information

Type -
Description -
Location Contig3052: 26279-29363
Sequence    

Annotation

kegg
ID tcc:TCM_011383
description 6-phosphogluconate dehydrogenase family protein isoform 1
nr
ID XP_007045684.1
description 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q94KU1
description 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1
trembl
ID A0A061EAT3
description 6-phosphogluconate dehydrogenase, decarboxylating OS=Theobroma cacao GN=TCM_011383 PE=3 SV=1
Gene Ontology
ID GO:0005777
description 6-phosphogluconate decarboxylating 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32175: 26296-29344
cDNA
(Sanger)
(ID:Location)		 016_P03.ab1: 26404-28229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_030 0.0 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
2 Hb_012678_020 0.1127853584 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
3 Hb_001006_270 0.11758177 - - peptide transporter, putative [Ricinus communis]
4 Hb_004525_040 0.1200627623 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
5 Hb_002902_130 0.1203047293 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
6 Hb_033152_070 0.120592531 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
7 Hb_003052_180 0.1209922 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
8 Hb_000494_030 0.122656512 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
9 Hb_004094_020 0.123881054 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
10 Hb_000003_310 0.1245802408 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
11 Hb_003994_220 0.124667496 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
12 Hb_000237_040 0.1248846245 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_000254_070 0.1252177459 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
14 Hb_001842_010 0.1254948363 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000260_510 0.1258444348 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
16 Hb_000390_050 0.1265792245 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
17 Hb_000701_030 0.1271124372 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
18 Hb_001210_040 0.1279133562 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
19 Hb_001584_340 0.1279158481 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
20 Hb_000928_190 0.1297618551 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_030 Hb_003052_030 Hb_012678_020 Hb_012678_020 Hb_003052_030--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_003052_030--Hb_001006_270 Hb_004525_040 Hb_004525_040 Hb_003052_030--Hb_004525_040 Hb_002902_130 Hb_002902_130 Hb_003052_030--Hb_002902_130 Hb_033152_070 Hb_033152_070 Hb_003052_030--Hb_033152_070 Hb_003052_180 Hb_003052_180 Hb_003052_030--Hb_003052_180 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_002093_060 Hb_002093_060 Hb_012678_020--Hb_002093_060 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_000800_090 Hb_000800_090 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_000928_190 Hb_000928_190 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_004525_040--Hb_033152_070 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_010042_020 Hb_010042_020 Hb_004525_040--Hb_010042_020 Hb_003988_050 Hb_003988_050 Hb_002902_130--Hb_003988_050 Hb_003097_140 Hb_003097_140 Hb_002902_130--Hb_003097_140 Hb_000365_400 Hb_000365_400 Hb_002902_130--Hb_000365_400 Hb_000390_050 Hb_000390_050 Hb_002902_130--Hb_000390_050 Hb_001703_050 Hb_001703_050 Hb_002902_130--Hb_001703_050 Hb_002902_130--Hb_000389_030 Hb_033152_070--Hb_010042_020 Hb_003207_020 Hb_003207_020 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9885 21.143 27.579 127.325 28.6201 25.824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2447 14.4648 28.0049 75.4452 77.0944

CAGE analysis