Hb_003052_180

Information

Type -
Description -
Location Contig3052: 166475-175784
Sequence    

Annotation

kegg
ID rcu:RCOM_1464650
description Diacylglycerol Cholinephosphotransferase (EC:2.7.8.2)
nr
ID XP_002514532.1
description Diacylglycerol Cholinephosphotransferase [Ricinus communis]
swissprot
ID O82567
description Choline/ethanolaminephosphotransferase 1 OS=Arabidopsis thaliana GN=AAPT1 PE=1 SV=1
trembl
ID B9RLB3
description Diacylglycerol Cholinephosphotransferase OS=Ricinus communis GN=RCOM_1464650 PE=3 SV=1
Gene Ontology
ID GO:0016020
description choline ethanolaminephosphotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32193: 166554-166660 , PASA_asmbl_32194: 166661-175290 , PASA_asmbl_32195: 172623-172859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_180 0.0 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
2 Hb_001842_010 0.0834767551 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_033152_070 0.0858302602 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
4 Hb_003071_070 0.0862618661 - - sucrose synthase 3 [Hevea brasiliensis]
5 Hb_004881_030 0.091915957 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
6 Hb_001946_180 0.093057028 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005218_020 0.0938931247 - - Uncharacterized protein isoform 3 [Theobroma cacao]
8 Hb_000107_110 0.0956597523 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004525_040 0.0979182239 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
10 Hb_002603_050 0.0986631866 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
11 Hb_000679_230 0.1008607197 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
12 Hb_010042_020 0.1024866931 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
13 Hb_000258_240 0.1037286387 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_007765_040 0.1052774522 - - Cytosolic enolase isoform 3 [Theobroma cacao]
15 Hb_001104_130 0.105611205 - - C-14 sterol reductase, putative [Ricinus communis]
16 Hb_000928_190 0.1057072122 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
17 Hb_002226_080 0.1057767357 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
18 Hb_002660_110 0.1059669996 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
19 Hb_004040_030 0.1066333467 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
20 Hb_003998_040 0.1075483109 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003052_180 Hb_003052_180 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_001842_010--Hb_001946_180 Hb_000679_230 Hb_000679_230 Hb_001842_010--Hb_000679_230 Hb_001842_010--Hb_005218_020 Hb_002804_040 Hb_002804_040 Hb_001842_010--Hb_002804_040 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200 Hb_010042_020 Hb_010042_020 Hb_033152_070--Hb_010042_020 Hb_003207_020 Hb_003207_020 Hb_033152_070--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_002660_110 Hb_002660_110 Hb_003071_070--Hb_002660_110 Hb_007574_070 Hb_007574_070 Hb_003071_070--Hb_007574_070 Hb_002603_050 Hb_002603_050 Hb_003071_070--Hb_002603_050 Hb_000622_350 Hb_000622_350 Hb_003071_070--Hb_000622_350 Hb_003071_070--Hb_001842_010 Hb_001104_130 Hb_001104_130 Hb_004881_030--Hb_001104_130 Hb_000107_110 Hb_000107_110 Hb_004881_030--Hb_000107_110 Hb_004881_030--Hb_002603_050 Hb_004881_030--Hb_033152_070 Hb_004881_030--Hb_000928_190 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33123 5.18276 6.40292 31.8601 4.93708 9.66517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9457 5.59742 8.13973 10.533 13.0638

CAGE analysis