Hb_000622_350

Information

Type -
Description -
Location Contig622: 280955-285638
Sequence    

Annotation

kegg
ID rcu:RCOM_1617160
description Protein ABIL1, putative
nr
ID XP_012083285.1
description PREDICTED: protein ABIL1 [Jatropha curcas]
swissprot
ID Q8S8M5
description Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=1 SV=1
trembl
ID A0A067K9P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51592: 280636-283053 , PASA_asmbl_51593: 281318-281643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_350 0.0 - - PREDICTED: protein ABIL1 [Jatropha curcas]
2 Hb_000173_060 0.1042267481 - - Dual specificity protein phosphatase, putative [Ricinus communis]
3 Hb_002660_110 0.1083330997 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
4 Hb_004126_040 0.1092091307 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000094_290 0.1133635559 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
6 Hb_000074_100 0.1154709126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000889_100 0.1185970804 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
8 Hb_003071_070 0.1238054456 - - sucrose synthase 3 [Hevea brasiliensis]
9 Hb_000300_090 0.1255867897 - - catalytic, putative [Ricinus communis]
10 Hb_000002_480 0.1259055715 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
11 Hb_009661_030 0.1267295509 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
12 Hb_000720_080 0.127782707 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
13 Hb_008566_040 0.1296265849 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
14 Hb_000035_220 0.1296755313 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
15 Hb_011926_040 0.1297156533 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_003878_200 0.1298806442 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
17 Hb_000684_260 0.1313729239 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
18 Hb_003052_180 0.1324494399 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
19 Hb_000399_060 0.1331492853 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
20 Hb_019181_030 0.1358823118 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000622_350 Hb_000622_350 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_009913_040 Hb_009913_040 Hb_000173_060--Hb_009913_040 Hb_000173_060--Hb_000094_290 Hb_011926_040 Hb_011926_040 Hb_000173_060--Hb_011926_040 Hb_003058_100 Hb_003058_100 Hb_000173_060--Hb_003058_100 Hb_000300_090 Hb_000300_090 Hb_000173_060--Hb_000300_090 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040 Hb_000256_230 Hb_000256_230 Hb_004126_040--Hb_000256_230 Hb_000389_030 Hb_000389_030 Hb_004126_040--Hb_000389_030 Hb_000665_170 Hb_000665_170 Hb_004126_040--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_004126_040--Hb_003209_130 Hb_000622_110 Hb_000622_110 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000889_100 Hb_000094_290--Hb_011926_040 Hb_010003_010 Hb_010003_010 Hb_000094_290--Hb_010003_010 Hb_000074_100--Hb_002660_110 Hb_000359_290 Hb_000359_290 Hb_000074_100--Hb_000359_290 Hb_000002_480 Hb_000002_480 Hb_000074_100--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_000074_100--Hb_000890_230 Hb_000720_080 Hb_000720_080 Hb_000074_100--Hb_000720_080 Hb_051257_010 Hb_051257_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17844 1.37382 6.08022 16.6239 2.14938 4.42268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76702 3.09881 2.16217 3.30353 6.31241

CAGE analysis