Hb_000720_080

Information

Type -
Description -
Location Contig720: 116433-119707
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12380g
description POPTRDRAFT_817341; UDP-glucose 4-epimerase family protein
nr
ID XP_012086966.1
description PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
swissprot
ID B0M3E8
description Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 OS=Pisum sativum GN=UGE1 PE=1 SV=2
trembl
ID A0A067JZP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20636 PE=3 SV=1
Gene Ontology
ID GO:0003978
description bifunctional udp-glucose 4-epimerase and udp-xylose 4-epimerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55633: 116942-117822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_080 0.0 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
2 Hb_000622_350 0.127782707 - - PREDICTED: protein ABIL1 [Jatropha curcas]
3 Hb_000002_480 0.1308923949 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
4 Hb_000331_370 0.1318526195 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
5 Hb_000004_010 0.1334463851 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
6 Hb_000077_290 0.1406629603 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004126_040 0.1436174979 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000028_600 0.1467950094 - - glutaredoxin-1, grx1, putative [Ricinus communis]
9 Hb_086639_080 0.1474477626 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002660_110 0.1530255201 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
11 Hb_004525_040 0.1543865625 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
12 Hb_029695_050 0.154414582 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
13 Hb_088163_010 0.1571047716 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_000008_190 0.1574160145 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
15 Hb_000622_110 0.1580006179 - - cmp-sialic acid transporter, putative [Ricinus communis]
16 Hb_003052_180 0.1593046989 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
17 Hb_003071_070 0.1607671738 - - sucrose synthase 3 [Hevea brasiliensis]
18 Hb_000074_100 0.1639515631 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000890_230 0.1651299918 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
20 Hb_002192_030 0.1678289389 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000720_080 Hb_000720_080 Hb_000622_350 Hb_000622_350 Hb_000720_080--Hb_000622_350 Hb_000002_480 Hb_000002_480 Hb_000720_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_000720_080--Hb_000331_370 Hb_000004_010 Hb_000004_010 Hb_000720_080--Hb_000004_010 Hb_000077_290 Hb_000077_290 Hb_000720_080--Hb_000077_290 Hb_004126_040 Hb_004126_040 Hb_000720_080--Hb_004126_040 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_012651_010 Hb_012651_010 Hb_000002_480--Hb_012651_010 Hb_000890_230 Hb_000890_230 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_000107_080 Hb_000107_080 Hb_000331_370--Hb_000107_080 Hb_000331_370--Hb_086639_080 Hb_000331_370--Hb_000890_230 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_001747_030 Hb_001747_030 Hb_000004_010--Hb_001747_030 Hb_000016_060 Hb_000016_060 Hb_000004_010--Hb_000016_060 Hb_007390_020 Hb_007390_020 Hb_000004_010--Hb_007390_020 Hb_005527_020 Hb_005527_020 Hb_000004_010--Hb_005527_020 Hb_003669_010 Hb_003669_010 Hb_000004_010--Hb_003669_010 Hb_005170_010 Hb_005170_010 Hb_000077_290--Hb_005170_010 Hb_000230_180 Hb_000230_180 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000077_290--Hb_000889_100 Hb_000256_230 Hb_000256_230 Hb_004126_040--Hb_000256_230 Hb_000389_030 Hb_000389_030 Hb_004126_040--Hb_000389_030 Hb_000665_170 Hb_000665_170 Hb_004126_040--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_004126_040--Hb_003209_130 Hb_000622_110 Hb_000622_110 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45934 1.32987 4.5561 18.9856 3.81972 4.60881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24923 2.48462 1.1681 5.66262 3.95242

CAGE analysis