Hb_000077_290

Information

Type -
Description -
Location Contig77: 258094-259342
Sequence    

Annotation

kegg
ID rcu:RCOM_1175450
description hypothetical protein
nr
ID XP_002517938.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q940P5
description Tetraspanin-19 OS=Arabidopsis thaliana GN=TOM2AH3 PE=2 SV=1
trembl
ID B9RW19
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175450 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57603: 245549-260941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005170_010 0.0953984562 - - -
3 Hb_000230_180 0.1108152298 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
4 Hb_004525_040 0.1151925109 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
5 Hb_012194_060 0.1196160174 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
6 Hb_000035_330 0.124405722 - - Transmembrane protein 85 [Theobroma cacao]
7 Hb_000889_100 0.1249276185 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
8 Hb_010003_010 0.1255524555 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
9 Hb_031931_020 0.1270720602 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
10 Hb_086639_080 0.1294865852 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000002_480 0.129828795 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_003052_180 0.1305479461 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
13 Hb_100137_010 0.1314251781 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
14 Hb_002486_050 0.1356133281 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
15 Hb_004126_040 0.1369085928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000008_190 0.1373155501 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
17 Hb_007765_040 0.1373574338 - - Cytosolic enolase isoform 3 [Theobroma cacao]
18 Hb_000331_370 0.1383866655 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
19 Hb_000066_030 0.1390368846 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
20 Hb_000720_080 0.1406629603 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_290 Hb_000077_290 Hb_005170_010 Hb_005170_010 Hb_000077_290--Hb_005170_010 Hb_000230_180 Hb_000230_180 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000889_100 Hb_000889_100 Hb_000077_290--Hb_000889_100 Hb_005170_010--Hb_000230_180 Hb_005170_010--Hb_000035_330 Hb_086639_080 Hb_086639_080 Hb_005170_010--Hb_086639_080 Hb_002611_020 Hb_002611_020 Hb_005170_010--Hb_002611_020 Hb_002226_080 Hb_002226_080 Hb_005170_010--Hb_002226_080 Hb_000230_180--Hb_002611_020 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_033152_070 Hb_033152_070 Hb_004525_040--Hb_033152_070 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_010042_020 Hb_010042_020 Hb_004525_040--Hb_010042_020 Hb_000265_140 Hb_000265_140 Hb_012194_060--Hb_000265_140 Hb_002486_050 Hb_002486_050 Hb_012194_060--Hb_002486_050 Hb_000035_220 Hb_000035_220 Hb_012194_060--Hb_000035_220 Hb_005062_110 Hb_005062_110 Hb_012194_060--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_012194_060--Hb_000085_260 Hb_000701_030 Hb_000701_030 Hb_012194_060--Hb_000701_030 Hb_000035_330--Hb_000701_030 Hb_003097_140 Hb_003097_140 Hb_000035_330--Hb_003097_140 Hb_002902_130 Hb_002902_130 Hb_000035_330--Hb_002902_130 Hb_143629_130 Hb_143629_130 Hb_000035_330--Hb_143629_130 Hb_007286_020 Hb_007286_020 Hb_000035_330--Hb_007286_020 Hb_001006_270 Hb_001006_270 Hb_000035_330--Hb_001006_270 Hb_051257_010 Hb_051257_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000094_290 Hb_000094_290 Hb_000889_100--Hb_000094_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.55406 7.47468 14.9305 56.9427 13.4026 20.2537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.52871 4.46654 8.6382 16.4887 15.7393

CAGE analysis