Hb_000230_180

Information

Type -
Description -
Location Contig230: 218361-222741
Sequence    

Annotation

kegg
ID rcu:RCOM_0679070
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_002516833.1
description prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
swissprot
ID Q8LAN3
description Probable prolyl 4-hydroxylase 4 OS=Arabidopsis thaliana GN=P4H4 PE=2 SV=1
trembl
ID B9RSW4
description Prolyl 4-hydroxylase alpha subunit, putative OS=Ricinus communis GN=RCOM_0679070 PE=4 SV=1
Gene Ontology
ID GO:0005506
description probable prolyl 4-hydroxylase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24007: 218338-222680 , PASA_asmbl_24008: 218846-219547 , PASA_asmbl_24009: 221639-221999
cDNA
(Sanger)
(ID:Location)		 049_I02.ab1: 218806-222640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_180 0.0 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
2 Hb_002611_020 0.0856289799 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
3 Hb_005170_010 0.0901884102 - - -
4 Hb_075764_010 0.1000461489 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
5 Hb_086639_080 0.1044886134 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002498_050 0.1052804533 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
7 Hb_000696_010 0.1068768236 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
8 Hb_002122_010 0.10930716 - - -
9 Hb_000077_290 0.1108152298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028707_080 0.1166423326 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
11 Hb_001191_110 0.118219089 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_000107_080 0.1197235935 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
13 Hb_000890_230 0.1246954471 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
14 Hb_010655_020 0.1249437281 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
15 Hb_165402_010 0.1262226321 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
16 Hb_010003_010 0.12678766 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
17 Hb_000103_310 0.1271687821 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
18 Hb_000331_370 0.1290776626 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
19 Hb_000146_040 0.1308117484 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
20 Hb_088163_010 0.1309466514 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_180 Hb_000230_180 Hb_002611_020 Hb_002611_020 Hb_000230_180--Hb_002611_020 Hb_005170_010 Hb_005170_010 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_002611_020--Hb_005170_010 Hb_002611_020--Hb_000696_010 Hb_000077_290 Hb_000077_290 Hb_005170_010--Hb_000077_290 Hb_000035_330 Hb_000035_330 Hb_005170_010--Hb_000035_330 Hb_005170_010--Hb_086639_080 Hb_002226_080 Hb_002226_080 Hb_005170_010--Hb_002226_080 Hb_088163_010 Hb_088163_010 Hb_075764_010--Hb_088163_010 Hb_099878_050 Hb_099878_050 Hb_075764_010--Hb_099878_050 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_075764_010--Hb_002122_010 Hb_000139_530 Hb_000139_530 Hb_086639_080--Hb_000139_530 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_000002_480 Hb_000002_480 Hb_086639_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_086639_080--Hb_000331_370 Hb_004102_170 Hb_004102_170 Hb_086639_080--Hb_004102_170 Hb_028707_080 Hb_028707_080 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_001191_110 Hb_001191_110 Hb_000696_010--Hb_001191_110 Hb_003671_010 Hb_003671_010 Hb_000696_010--Hb_003671_010 Hb_000146_040 Hb_000146_040 Hb_000696_010--Hb_000146_040 Hb_002375_040 Hb_002375_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_033286_010 Hb_033286_010 Hb_000696_010--Hb_033286_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5624 20.2418 32.0306 92.6381 38.3983 55.4601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5381 14.142 16.062 29.4316 21.3195

CAGE analysis