Hb_000890_230

Information

Type -
Description -
Location Contig890: 200618-205087
Sequence    

Annotation

kegg
ID tcc:TCM_021150
description Alpha/beta-Hydrolases superfamily protein
nr
ID KDP40015.1
description hypothetical protein JCGZ_02013 [Jatropha curcas]
swissprot
ID P19515
description Lipase OS=Rhizomucor miehei PE=1 SV=2
trembl
ID A0A067L683
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02013 PE=4 SV=1
Gene Ontology
ID GO:0030600
description lipase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61619: 200953-203933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_230 0.0 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
2 Hb_008406_180 0.0804844643 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
3 Hb_086639_080 0.0843665179 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000107_080 0.0860545856 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
5 Hb_000331_370 0.0870145415 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
6 Hb_000002_480 0.0875865291 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
7 Hb_012651_010 0.0893806008 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
8 Hb_002226_080 0.0902508761 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
9 Hb_005977_100 0.0911038862 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
10 Hb_004102_170 0.0924333516 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
11 Hb_159809_030 0.0945017828 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
12 Hb_000139_530 0.0965707953 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_600 0.0989236015 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000049_020 0.1011498205 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_001946_180 0.1025023489 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007286_020 0.104701918 - - hypothetical protein L484_010675 [Morus notabilis]
17 Hb_000146_040 0.106998406 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
18 Hb_000056_130 0.1116161278 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
19 Hb_000140_350 0.1124559702 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000193_300 0.1128131395 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_230 Hb_000890_230 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_086639_080 Hb_086639_080 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_001157_230 Hb_001157_230 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080 Hb_000139_530 Hb_000139_530 Hb_086639_080--Hb_000139_530 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_086639_080--Hb_000002_480 Hb_086639_080--Hb_000331_370 Hb_004102_170 Hb_004102_170 Hb_086639_080--Hb_004102_170 Hb_000107_080--Hb_000331_370 Hb_004157_100 Hb_004157_100 Hb_000107_080--Hb_004157_100 Hb_000146_040 Hb_000146_040 Hb_000107_080--Hb_000146_040 Hb_001191_110 Hb_001191_110 Hb_000107_080--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_000107_080--Hb_000696_010 Hb_000331_370--Hb_000002_480 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_000002_480--Hb_012651_010 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43529 7.61191 8.13339 25.5085 8.92596 10.8773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62896 5.08125 5.16007 6.26211 10.3173

CAGE analysis