Hb_008406_180

Information

Type -
Description -
Location Contig8406: 117681-127442
Sequence    

Annotation

kegg
ID rcu:RCOM_1173530
description protein binding protein, putative
nr
ID XP_007043625.1
description RING/U-box superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID O43085
description DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
trembl
ID A0A061E521
description RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_008139 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60128: 117873-127420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_180 0.0 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
2 Hb_000049_020 0.0789924556 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_000890_230 0.0804844643 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
4 Hb_002400_320 0.0871903031 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001157_230 0.087651845 - - Protein AFR, putative [Ricinus communis]
6 Hb_000056_130 0.089663242 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
7 Hb_002226_080 0.0904829368 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
8 Hb_000922_300 0.0920814571 - - PREDICTED: GDSL esterase/lipase At5g62930 isoform X1 [Cucumis melo]
9 Hb_005977_100 0.0927218542 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
10 Hb_001946_180 0.0969211828 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005015_060 0.0971373638 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
12 Hb_001876_040 0.0978294729 - - PREDICTED: mucin-5B [Jatropha curcas]
13 Hb_000399_060 0.0987599736 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
14 Hb_000230_130 0.1004733363 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
15 Hb_000139_530 0.1011511871 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000212_120 0.1029113199 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
17 Hb_000256_150 0.1036808757 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
18 Hb_000320_340 0.104284439 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
19 Hb_000002_480 0.104495379 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
20 Hb_002289_060 0.1050988193 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008406_180 Hb_008406_180 Hb_000049_020 Hb_000049_020 Hb_008406_180--Hb_000049_020 Hb_000890_230 Hb_000890_230 Hb_008406_180--Hb_000890_230 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_001157_230 Hb_001157_230 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_086639_080 Hb_086639_080 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_005977_100 Hb_005977_100 Hb_002400_320--Hb_005977_100 Hb_000212_120 Hb_000212_120 Hb_002400_320--Hb_000212_120 Hb_005015_060 Hb_005015_060 Hb_002400_320--Hb_005015_060 Hb_004531_100 Hb_004531_100 Hb_002400_320--Hb_004531_100 Hb_000703_100 Hb_000703_100 Hb_002400_320--Hb_000703_100 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0128 11.3802 17.9799 41.1462 14.2559 16.1455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8003 8.74262 8.90953 13.0694 25.7801

CAGE analysis