Hb_005977_100

Information

Type -
Description -
Location Contig5977: 64739-72051
Sequence    

Annotation

kegg
ID tcc:TCM_003762
description Tetraspanin family protein, putative
nr
ID XP_012085178.1
description PREDICTED: tetraspanin-18 [Jatropha curcas]
swissprot
ID Q93XY5
description Tetraspanin-18 OS=Arabidopsis thaliana GN=TOM2AH2 PE=2 SV=1
trembl
ID A0A067JUE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17591 PE=4 SV=1
Gene Ontology
ID GO:0005773
description tetraspanin-18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50429: 64743-72064
cDNA
(Sanger)
(ID:Location)		 003_A20.ab1: 68651-72053 , 046_C08.ab1: 68639-72064

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005977_100 0.0 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
2 Hb_000049_020 0.0752617186 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_007545_010 0.0773509044 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
4 Hb_011310_110 0.0783874247 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
5 Hb_000212_420 0.0788902782 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
6 Hb_003209_130 0.0799784935 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_004102_170 0.0854805525 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
8 Hb_001677_200 0.0858394552 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000300_270 0.0876100462 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_044486_020 0.088227472 - - CASTOR protein [Glycine max]
11 Hb_006120_050 0.0893229781 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
12 Hb_002400_320 0.0900176962 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008014_040 0.0903527039 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
14 Hb_000890_230 0.0911038862 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
15 Hb_009252_030 0.0912600985 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
16 Hb_008406_180 0.0927218542 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
17 Hb_010042_030 0.0929481175 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
18 Hb_001946_180 0.0935923965 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001876_040 0.0936268629 - - PREDICTED: mucin-5B [Jatropha curcas]
20 Hb_001440_020 0.0941001306 - - exocyst componenet sec8, putative [Ricinus communis]

Gene co-expression network

sample Hb_005977_100 Hb_005977_100 Hb_000049_020 Hb_000049_020 Hb_005977_100--Hb_000049_020 Hb_007545_010 Hb_007545_010 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_010672_020 Hb_010672_020 Hb_011310_110--Hb_010672_020 Hb_006120_050 Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_011310_110--Hb_000049_020 Hb_000705_230 Hb_000705_230 Hb_011310_110--Hb_000705_230 Hb_011310_110--Hb_000665_170 Hb_010315_020 Hb_010315_020 Hb_000212_420--Hb_010315_020 Hb_001329_250 Hb_001329_250 Hb_000212_420--Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_000212_420--Hb_003498_080 Hb_008014_040 Hb_008014_040 Hb_000212_420--Hb_008014_040 Hb_001776_020 Hb_001776_020 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_002486_050 Hb_002486_050 Hb_003209_130--Hb_002486_050 Hb_000256_230 Hb_000256_230 Hb_003209_130--Hb_000256_230 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_000622_110 Hb_000622_110 Hb_003209_130--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_003209_130--Hb_004126_040 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_005797_010 Hb_005797_010 Hb_004102_170--Hb_005797_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5589 37.0401 38.251 77.7876 25.0747 29.981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5708 18.3591 20.1865 22.98 44.7181

CAGE analysis