Hb_008014_040

Information

Type -
Description -
Location Contig8014: 56992-60949
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06760g
description POPTRDRAFT_660721; hypothetical protein
nr
ID XP_012091848.1
description PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
swissprot
ID Q5FVJ6
description Seipin OS=Rattus norvegicus GN=Bscl2 PE=2 SV=1
trembl
ID A0A067JBK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58796: 58615-60820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008014_040 0.0 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
2 Hb_010315_020 0.058332911 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
3 Hb_000212_420 0.0610360743 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
4 Hb_008511_020 0.077653048 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
5 Hb_000069_570 0.0804003621 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
6 Hb_022250_010 0.0813758371 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
7 Hb_159809_030 0.0871031045 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
8 Hb_001876_040 0.0872656932 - - PREDICTED: mucin-5B [Jatropha curcas]
9 Hb_010042_030 0.0900193096 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
10 Hb_001440_020 0.0902798947 - - exocyst componenet sec8, putative [Ricinus communis]
11 Hb_005977_100 0.0903527039 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
12 Hb_002883_030 0.0917161745 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
13 Hb_001329_250 0.0925193323 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
14 Hb_000066_150 0.0927088285 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_183086_030 0.0948370661 - - GTPase-activating protein GYP7 [Gossypium arboreum]
16 Hb_000503_020 0.095032733 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
17 Hb_024184_010 0.0958268718 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
18 Hb_001856_180 0.0966448084 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
19 Hb_000022_190 0.0967774599 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
20 Hb_003498_080 0.0970148193 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008014_040 Hb_008014_040 Hb_010315_020 Hb_010315_020 Hb_008014_040--Hb_010315_020 Hb_000212_420 Hb_000212_420 Hb_008014_040--Hb_000212_420 Hb_008511_020 Hb_008511_020 Hb_008014_040--Hb_008511_020 Hb_000069_570 Hb_000069_570 Hb_008014_040--Hb_000069_570 Hb_022250_010 Hb_022250_010 Hb_008014_040--Hb_022250_010 Hb_159809_030 Hb_159809_030 Hb_008014_040--Hb_159809_030 Hb_010315_020--Hb_000212_420 Hb_000066_150 Hb_000066_150 Hb_010315_020--Hb_000066_150 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_001329_250 Hb_001329_250 Hb_000212_420--Hb_001329_250 Hb_003498_080 Hb_003498_080 Hb_000212_420--Hb_003498_080 Hb_000212_420--Hb_001776_020 Hb_010042_030 Hb_010042_030 Hb_000212_420--Hb_010042_030 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_000022_190 Hb_000022_190 Hb_000069_570--Hb_000022_190 Hb_005048_140 Hb_005048_140 Hb_000069_570--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_000069_570--Hb_116420_040 Hb_000069_570--Hb_010315_020 Hb_162275_040 Hb_162275_040 Hb_000069_570--Hb_162275_040 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_004102_170 Hb_004102_170 Hb_159809_030--Hb_004102_170 Hb_121089_030 Hb_121089_030 Hb_159809_030--Hb_121089_030 Hb_159809_030--Hb_008511_020 Hb_159809_030--Hb_000049_020 Hb_159809_030--Hb_001440_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.32404 12.8699 13.4596 21.7486 8.11115 14.6714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94148 4.67953 7.50933 9.06664 18.0852

CAGE analysis