Hb_143629_130

Information

Type -
Description -
Location Contig143629: 83150-93134
Sequence    

Annotation

kegg
ID egr:104419914
description putative membrane-bound O-acyltransferase C24H6.01c
nr
ID CDP15157.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q09758
description Putative membrane-bound O-acyltransferase C24H6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.01c PE=3 SV=4
trembl
ID A0A068V3M7
description Coffea canephora DH200=94 genomic scaffold, scaffold_96 OS=Coffea canephora GN=GSCOC_T00042756001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_130 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002414_060 0.0833363844 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
3 Hb_007558_100 0.0978473676 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
4 Hb_000035_330 0.0991502197 - - Transmembrane protein 85 [Theobroma cacao]
5 Hb_003055_040 0.1004423044 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
6 Hb_002686_310 0.1033594069 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
7 Hb_004317_060 0.1077507988 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
8 Hb_001258_110 0.1120747224 - - transporter, putative [Ricinus communis]
9 Hb_000429_150 0.1144707697 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
10 Hb_099878_030 0.1157665163 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
11 Hb_001014_210 0.1161035508 - - CYP51 [Hevea brasiliensis]
12 Hb_179306_020 0.1198776319 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_000004_020 0.1216333036 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004040_030 0.1221405728 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
15 Hb_004668_090 0.1231923111 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
16 Hb_001662_100 0.1231937461 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
17 Hb_000208_280 0.1251300333 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
18 Hb_000787_160 0.1255529663 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
19 Hb_001437_190 0.1266127753 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000140_280 0.1268805612 - - hypothetical protein B456_001G157900 [Gossypium raimondii]

Gene co-expression network

sample Hb_143629_130 Hb_143629_130 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_000429_150 Hb_000429_150 Hb_002414_060--Hb_000429_150 Hb_002414_060--Hb_007558_100 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_007558_100--Hb_000429_150 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_007558_100--Hb_002686_310 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_000701_030 Hb_000701_030 Hb_000035_330--Hb_000701_030 Hb_003097_140 Hb_003097_140 Hb_000035_330--Hb_003097_140 Hb_002902_130 Hb_002902_130 Hb_000035_330--Hb_002902_130 Hb_007286_020 Hb_007286_020 Hb_000035_330--Hb_007286_020 Hb_001006_270 Hb_001006_270 Hb_000035_330--Hb_001006_270 Hb_179306_020 Hb_179306_020 Hb_003055_040--Hb_179306_020 Hb_001258_110 Hb_001258_110 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_000836_550 Hb_000836_550 Hb_003055_040--Hb_000836_550 Hb_004450_070 Hb_004450_070 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_002686_310--Hb_003055_040 Hb_000915_240 Hb_000915_240 Hb_002686_310--Hb_000915_240 Hb_002686_310--Hb_179306_020 Hb_000270_390 Hb_000270_390 Hb_004317_060--Hb_000270_390 Hb_001437_190 Hb_001437_190 Hb_004317_060--Hb_001437_190 Hb_004317_060--Hb_084670_010 Hb_004317_060--Hb_007558_100 Hb_000237_040 Hb_000237_040 Hb_004317_060--Hb_000237_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145627 0.257718 0.176474 0.712331 0.213561 0.537075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22634 0.296807 0.149675 0.543716 0.333527

CAGE analysis