Hb_000836_550

Information

Type -
Description -
Location Contig836: 449346-451393
Sequence    

Annotation

kegg
ID rcu:RCOM_1616970
description hypothetical protein
nr
ID XP_012083295.1
description PREDICTED: reticulon-like protein B5 [Jatropha curcas]
swissprot
ID O82352
description Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1
trembl
ID A0A067JXD8
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_14323 PE=4 SV=1
Gene Ontology
ID GO:0005783
description reticulon-like protein b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59990: 449498-451816
cDNA
(Sanger)
(ID:Location)		 032_O17.ab1: 449517-449659 , 052_B19.ab1: 449501-451082 , 052_H20.ab1: 449517-451279 , 053_D03.ab1: 449498-450711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_550 0.0 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
2 Hb_003055_040 0.0868914635 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
3 Hb_006573_210 0.0955581699 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
4 Hb_006910_060 0.0977950619 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
5 Hb_015026_130 0.1050992647 - - quinone oxidoreductase, putative [Ricinus communis]
6 Hb_001258_110 0.1097550827 - - transporter, putative [Ricinus communis]
7 Hb_004987_020 0.1118241334 - - -
8 Hb_007286_020 0.1127662784 - - hypothetical protein L484_010675 [Morus notabilis]
9 Hb_000579_130 0.1159035203 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001114_110 0.1159427482 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
11 Hb_006502_030 0.1186191801 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
12 Hb_002307_280 0.1202655919 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
13 Hb_000836_280 0.1215761654 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
14 Hb_019280_010 0.1218643937 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
15 Hb_009787_050 0.1227739885 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
16 Hb_002874_090 0.122913509 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
17 Hb_013057_020 0.124298503 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
18 Hb_001437_190 0.1248112342 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_002284_250 0.124820047 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
20 Hb_007137_050 0.1252839861 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000836_550 Hb_000836_550 Hb_003055_040 Hb_003055_040 Hb_000836_550--Hb_003055_040 Hb_006573_210 Hb_006573_210 Hb_000836_550--Hb_006573_210 Hb_006910_060 Hb_006910_060 Hb_000836_550--Hb_006910_060 Hb_015026_130 Hb_015026_130 Hb_000836_550--Hb_015026_130 Hb_001258_110 Hb_001258_110 Hb_000836_550--Hb_001258_110 Hb_004987_020 Hb_004987_020 Hb_000836_550--Hb_004987_020 Hb_179306_020 Hb_179306_020 Hb_003055_040--Hb_179306_020 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_004450_070 Hb_004450_070 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_006573_210--Hb_006910_060 Hb_011849_040 Hb_011849_040 Hb_006573_210--Hb_011849_040 Hb_011287_050 Hb_011287_050 Hb_006573_210--Hb_011287_050 Hb_000487_380 Hb_000487_380 Hb_006573_210--Hb_000487_380 Hb_000406_110 Hb_000406_110 Hb_006573_210--Hb_000406_110 Hb_006573_210--Hb_015026_130 Hb_000479_240 Hb_000479_240 Hb_006910_060--Hb_000479_240 Hb_001167_050 Hb_001167_050 Hb_006910_060--Hb_001167_050 Hb_000579_130 Hb_000579_130 Hb_006910_060--Hb_000579_130 Hb_031527_030 Hb_031527_030 Hb_006910_060--Hb_031527_030 Hb_000069_480 Hb_000069_480 Hb_006910_060--Hb_000069_480 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_015026_130--Hb_001258_110 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001258_110--Hb_002284_250 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080 Hb_000203_270 Hb_000203_270 Hb_004987_020--Hb_000203_270 Hb_005539_310 Hb_005539_310 Hb_004987_020--Hb_005539_310 Hb_000679_100 Hb_000679_100 Hb_004987_020--Hb_000679_100 Hb_000085_260 Hb_000085_260 Hb_004987_020--Hb_000085_260 Hb_000395_040 Hb_000395_040 Hb_004987_020--Hb_000395_040 Hb_000890_030 Hb_000890_030 Hb_004987_020--Hb_000890_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4372 102.946 43.3503 150.73 32.9336 86.9944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7674 35.4569 33.8594 99.1425 41.8359

CAGE analysis