Hb_006910_060

Information

Type -
Description -
Location Contig6910: 80419-88534
Sequence    

Annotation

kegg
ID rcu:RCOM_1305890
description hypothetical protein
nr
ID XP_012078421.1
description PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
swissprot
ID Q8L612
description MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1
trembl
ID A0A067KC14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54345: 65224-87980 , PASA_asmbl_54346: 86560-87980 , PASA_asmbl_54351: 86165-86361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006910_060 0.0 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
2 Hb_006573_210 0.0600166644 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
3 Hb_000479_240 0.0812661987 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
4 Hb_001167_050 0.0841590488 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
5 Hb_000579_130 0.0853143773 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_031527_030 0.086854077 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
7 Hb_000069_480 0.0872111782 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004645_070 0.0903431898 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
9 Hb_024650_080 0.0905345014 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
10 Hb_015026_130 0.090584435 - - quinone oxidoreductase, putative [Ricinus communis]
11 Hb_000331_580 0.0926979901 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_005568_040 0.0933197686 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
13 Hb_010809_010 0.0945309648 - - Na+/H+ antiporter [Populus euphratica]
14 Hb_000089_180 0.0945908759 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
15 Hb_000406_110 0.0962591384 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
16 Hb_011849_040 0.0970391069 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_009252_050 0.0970772968 - - protein binding protein, putative [Ricinus communis]
18 Hb_000856_020 0.097429354 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
19 Hb_019280_010 0.0974651868 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
20 Hb_000836_550 0.0977950619 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]

Gene co-expression network

sample Hb_006910_060 Hb_006910_060 Hb_006573_210 Hb_006573_210 Hb_006910_060--Hb_006573_210 Hb_000479_240 Hb_000479_240 Hb_006910_060--Hb_000479_240 Hb_001167_050 Hb_001167_050 Hb_006910_060--Hb_001167_050 Hb_000579_130 Hb_000579_130 Hb_006910_060--Hb_000579_130 Hb_031527_030 Hb_031527_030 Hb_006910_060--Hb_031527_030 Hb_000069_480 Hb_000069_480 Hb_006910_060--Hb_000069_480 Hb_011849_040 Hb_011849_040 Hb_006573_210--Hb_011849_040 Hb_011287_050 Hb_011287_050 Hb_006573_210--Hb_011287_050 Hb_000487_380 Hb_000487_380 Hb_006573_210--Hb_000487_380 Hb_000406_110 Hb_000406_110 Hb_006573_210--Hb_000406_110 Hb_015026_130 Hb_015026_130 Hb_006573_210--Hb_015026_130 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050 Hb_000331_580 Hb_000331_580 Hb_001167_050--Hb_000331_580 Hb_001167_050--Hb_005568_040 Hb_000010_420 Hb_000010_420 Hb_001167_050--Hb_000010_420 Hb_001167_050--Hb_004645_070 Hb_012286_040 Hb_012286_040 Hb_001167_050--Hb_012286_040 Hb_001951_170 Hb_001951_170 Hb_001167_050--Hb_001951_170 Hb_001085_080 Hb_001085_080 Hb_000579_130--Hb_001085_080 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_001558_040 Hb_001558_040 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_002007_260 Hb_002007_260 Hb_000579_130--Hb_002007_260 Hb_031527_030--Hb_012286_040 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_031527_030--Hb_011849_040 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_001489_100 Hb_001489_100 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000418_010 Hb_000418_010 Hb_000069_480--Hb_000418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14661 19.349 7.05963 18.5682 7.29908 11.3026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.20447 5.79692 4.65068 13.2878 10.9193

CAGE analysis