Hb_000418_010

Information

Type -
Description -
Location Contig418: 19295-25733
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12610g
description POPTRDRAFT_726930; hypothetical protein
nr
ID XP_012075682.1
description PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
swissprot
ID Q7ZWL6
description Repressor of RNA polymerase III transcription MAF1 homolog OS=Xenopus laevis GN=maf1 PE=2 SV=1
trembl
ID A0A067KFG8
description Repressor of RNA polymerase III transcription OS=Jatropha curcas GN=JCGZ_09269 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription regulator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41303: 20207-20452 , PASA_asmbl_41304: 25079-25617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_010 0.0 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
2 Hb_000197_030 0.063386548 - - hypothetical protein RCOM_1447500 [Ricinus communis]
3 Hb_000069_480 0.0800401035 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000671_080 0.080540247 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
5 Hb_001257_100 0.0851633357 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_001489_100 0.0857868475 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
7 Hb_006198_020 0.0888590112 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
8 Hb_000580_030 0.090754178 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
9 Hb_000059_020 0.0928612326 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
10 Hb_000890_030 0.0930242532 - - plastid CUL1 [Hevea brasiliensis]
11 Hb_005288_140 0.0964033428 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
12 Hb_012799_140 0.0966694812 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
13 Hb_000802_090 0.0977148884 - - ornithine aminotransferase, putative [Ricinus communis]
14 Hb_026198_060 0.0985466425 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_000649_250 0.0993321179 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
16 Hb_002869_050 0.0997681442 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
17 Hb_000069_130 0.0997886125 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
18 Hb_006573_210 0.1008531173 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
19 Hb_006910_060 0.1029333879 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
20 Hb_015026_130 0.1037999619 - - quinone oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000418_010 Hb_000418_010 Hb_000197_030 Hb_000197_030 Hb_000418_010--Hb_000197_030 Hb_000069_480 Hb_000069_480 Hb_000418_010--Hb_000069_480 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_001489_100 Hb_001489_100 Hb_000418_010--Hb_001489_100 Hb_006198_020 Hb_006198_020 Hb_000418_010--Hb_006198_020 Hb_000059_020 Hb_000059_020 Hb_000197_030--Hb_000059_020 Hb_000197_030--Hb_001489_100 Hb_026198_060 Hb_026198_060 Hb_000197_030--Hb_026198_060 Hb_002119_090 Hb_002119_090 Hb_000197_030--Hb_002119_090 Hb_000197_030--Hb_006198_020 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000671_080--Hb_001257_100 Hb_003599_030 Hb_003599_030 Hb_000671_080--Hb_003599_030 Hb_024650_080 Hb_024650_080 Hb_000671_080--Hb_024650_080 Hb_003849_220 Hb_003849_220 Hb_000671_080--Hb_003849_220 Hb_000926_150 Hb_000926_150 Hb_000671_080--Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_001257_100--Hb_002119_090 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_005015_080 Hb_005015_080 Hb_006198_020--Hb_005015_080 Hb_006198_020--Hb_000059_020 Hb_000069_130 Hb_000069_130 Hb_006198_020--Hb_000069_130 Hb_000940_200 Hb_000940_200 Hb_006198_020--Hb_000940_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0692 41.8583 20.529 37.6155 13.6539 17.1862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3974 9.75179 7.82321 18.0552 13.1558

CAGE analysis