Hb_000203_270

Information

Type -
Description -
Location Contig203: 325997-331093
Sequence    

Annotation

kegg
ID rcu:RCOM_0693100
description alpha-xylosidase, putative (EC:3.2.1.20)
nr
ID XP_002522166.1
description alpha-xylosidase, putative [Ricinus communis]
swissprot
ID P32138
description Alpha-glucosidase YihQ OS=Escherichia coli (strain K12) GN=yihQ PE=1 SV=3
trembl
ID B9S847
description Alpha-xylosidase, putative OS=Ricinus communis GN=RCOM_0693100 PE=3 SV=1
Gene Ontology
ID GO:0004558
description alpha-xylosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20811: 325901-326396 , PASA_asmbl_20812: 326912-328702 , PASA_asmbl_20813: 328951-329418 , PASA_asmbl_20814: 329434-329969 , PASA_asmbl_20815: 330353-330482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_270 0.0 - - alpha-xylosidase, putative [Ricinus communis]
2 Hb_004987_020 0.0819886744 - - -
3 Hb_002849_070 0.0899025218 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
4 Hb_002739_120 0.094042461 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
5 Hb_000200_170 0.100693488 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
6 Hb_001135_030 0.1031077052 - - PREDICTED: interaptin-like [Jatropha curcas]
7 Hb_003599_030 0.1058147019 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
8 Hb_000523_030 0.1058880069 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
9 Hb_001009_150 0.1059132596 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
10 Hb_017948_030 0.1061533866 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
11 Hb_009372_020 0.107826551 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
12 Hb_004218_120 0.1094505944 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
13 Hb_000197_180 0.1100924593 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
14 Hb_001675_320 0.1101405099 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
15 Hb_000056_080 0.1109356122 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
16 Hb_000671_030 0.1119524296 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
17 Hb_000395_040 0.1143964105 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
18 Hb_000912_100 0.1173520697 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
19 Hb_001878_060 0.1175747366 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
20 Hb_000735_080 0.1178888943 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000203_270 Hb_000203_270 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002849_070 Hb_002849_070 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000200_170 Hb_000200_170 Hb_000203_270--Hb_000200_170 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_005539_310 Hb_005539_310 Hb_004987_020--Hb_005539_310 Hb_000679_100 Hb_000679_100 Hb_004987_020--Hb_000679_100 Hb_000085_260 Hb_000085_260 Hb_004987_020--Hb_000085_260 Hb_000395_040 Hb_000395_040 Hb_004987_020--Hb_000395_040 Hb_000890_030 Hb_000890_030 Hb_004987_020--Hb_000890_030 Hb_002849_070--Hb_000200_170 Hb_000056_080 Hb_000056_080 Hb_002849_070--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_000200_170--Hb_001818_060 Hb_000035_050 Hb_000035_050 Hb_001135_030--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_001135_030--Hb_007253_010 Hb_013358_020 Hb_013358_020 Hb_001135_030--Hb_013358_020 Hb_159809_050 Hb_159809_050 Hb_001135_030--Hb_159809_050 Hb_004218_120 Hb_004218_120 Hb_001135_030--Hb_004218_120 Hb_000705_180 Hb_000705_180 Hb_003599_030--Hb_000705_180 Hb_000671_080 Hb_000671_080 Hb_003599_030--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_009372_020 Hb_009372_020 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24231 6.27503 4.72632 8.91209 1.45777 1.78676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49338 1.37319 1.31017 3.25496 2.6129

CAGE analysis