Hb_143766_030

Information

Type -
Description -
Location Contig143766: 24393-30127
Sequence    

Annotation

kegg
ID rcu:RCOM_1048170
description protein with unknown function
nr
ID XP_002514165.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID B9RKC1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11551: 24344-24523 , PASA_asmbl_11552: 24576-29939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002248_120 0.1031379837 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_003605_220 0.1055809466 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
4 Hb_000200_170 0.1089589334 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
5 Hb_000735_140 0.1099767472 - - 3-glucanase family protein [Populus trichocarpa]
6 Hb_023344_110 0.1115125611 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
7 Hb_000069_780 0.1115377749 - - atpob1, putative [Ricinus communis]
8 Hb_002876_210 0.1134396685 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
9 Hb_000912_100 0.1135207369 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
10 Hb_000111_370 0.1148363076 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
11 Hb_002217_090 0.1177425951 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
12 Hb_002849_070 0.118143555 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
13 Hb_000417_300 0.1187282208 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
14 Hb_002387_040 0.1190299179 - - protein transporter, putative [Ricinus communis]
15 Hb_004375_110 0.1195472645 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
16 Hb_004696_070 0.1195597724 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
17 Hb_004128_030 0.1206439549 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
18 Hb_009372_020 0.1208348375 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
19 Hb_000836_600 0.1213220729 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
20 Hb_004724_330 0.1215236087 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_143766_030 Hb_143766_030 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000200_170 Hb_000200_170 Hb_143766_030--Hb_000200_170 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_000460_060 Hb_000460_060 Hb_003605_220--Hb_000460_060 Hb_004994_300 Hb_004994_300 Hb_003605_220--Hb_004994_300 Hb_008686_020 Hb_008686_020 Hb_003605_220--Hb_008686_020 Hb_003605_220--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_003605_220--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_003605_220--Hb_001951_100 Hb_002849_070 Hb_002849_070 Hb_000200_170--Hb_002849_070 Hb_000056_080 Hb_000056_080 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000203_270 Hb_000203_270 Hb_000200_170--Hb_000203_270 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000735_140--Hb_000056_080 Hb_023344_110--Hb_003849_190 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_000270_230 Hb_000270_230 Hb_000069_780--Hb_000270_230 Hb_006054_030 Hb_006054_030 Hb_000069_780--Hb_006054_030 Hb_001369_780 Hb_001369_780 Hb_000069_780--Hb_001369_780 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.41616 39.784 17.1658 28.3272 6.01878 5.15005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67404 4.15702 9.0823 10.0646 20.196

CAGE analysis