Hb_003849_190

Information

Type -
Description -
Location Contig3849: 124270-127210
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05700g
description POPTRDRAFT_230496; hypothetical protein
nr
ID XP_012085532.1
description PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
swissprot
ID Q02527
description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2
trembl
ID A0A067K4I6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17852 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38772: 124171-127014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_190 0.0 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
2 Hb_008248_020 0.0975716005 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
3 Hb_023344_110 0.09938331 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
4 Hb_000735_140 0.1055772759 - - 3-glucanase family protein [Populus trichocarpa]
5 Hb_002875_070 0.1209362625 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
6 Hb_002450_030 0.1210471123 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_000056_080 0.1221752085 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
8 Hb_000035_050 0.1225308618 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
9 Hb_005054_020 0.1266520365 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
10 Hb_000028_430 0.1268778816 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
11 Hb_005714_100 0.1272726252 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
12 Hb_002849_070 0.1303912026 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
13 Hb_001474_050 0.1308650268 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
14 Hb_000077_160 0.1344381702 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
15 Hb_002281_010 0.1346394843 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
16 Hb_000200_170 0.1351266953 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
17 Hb_009862_020 0.1354560425 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
18 Hb_002759_260 0.1379753275 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
19 Hb_002325_060 0.1386886369 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
20 Hb_004218_120 0.1393963552 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_190 Hb_003849_190 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_008248_020--Hb_023344_110 Hb_005714_100 Hb_005714_100 Hb_008248_020--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008248_020--Hb_000035_050 Hb_001133_010 Hb_001133_010 Hb_008248_020--Hb_001133_010 Hb_009862_020 Hb_009862_020 Hb_008248_020--Hb_009862_020 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000735_140--Hb_000056_080 Hb_002875_070--Hb_005714_100 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23428 35.087 24.5767 46.4508 2.45689 3.34692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.65728 6.55206 7.9714 6.5187 17.3299

CAGE analysis