Hb_002450_030

Information

Type -
Description -
Location Contig2450: 21828-24035
Sequence    

Annotation

kegg
ID rcu:RCOM_1496940
description ATPP2-A13, putative
nr
ID XP_002510835.1
description ATPP2-A13, putative [Ricinus communis]
swissprot
ID Q9FJ80
description F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1
trembl
ID B9R9G0
description ATPP2-A13, putative OS=Ricinus communis GN=RCOM_1496940 PE=4 SV=1
Gene Ontology
ID GO:0030246
description f-box protein pp2-a13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25560: 21860-23865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_030 0.0 - - ATPP2-A13, putative [Ricinus communis]
2 Hb_003849_190 0.1210471123 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
3 Hb_002217_500 0.1245331118 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
4 Hb_023344_110 0.1300624353 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
5 Hb_084849_010 0.1320957817 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_200 0.1337351608 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
7 Hb_004218_120 0.1388493568 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
8 Hb_000035_050 0.1397787127 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
9 Hb_002875_070 0.1405513763 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
10 Hb_002217_090 0.1436627107 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
11 Hb_000012_240 0.1463786726 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
12 Hb_004116_070 0.1493892711 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
13 Hb_004117_170 0.1507983401 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
14 Hb_002759_260 0.1508195319 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
15 Hb_001135_030 0.1523390183 - - PREDICTED: interaptin-like [Jatropha curcas]
16 Hb_000912_100 0.1536625161 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
17 Hb_000056_080 0.1545839645 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
18 Hb_000637_020 0.1553839222 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
19 Hb_002046_060 0.1555603021 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
20 Hb_001500_030 0.1560083006 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_030 Hb_002450_030 Hb_003849_190 Hb_003849_190 Hb_002450_030--Hb_003849_190 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_023344_110 Hb_023344_110 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_000645_200 Hb_000645_200 Hb_002450_030--Hb_000645_200 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_001474_020 Hb_001474_020 Hb_002217_500--Hb_001474_020 Hb_003975_010 Hb_003975_010 Hb_002217_500--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002217_500--Hb_023344_110 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_013358_020 Hb_013358_020 Hb_084849_010--Hb_013358_020 Hb_000637_020 Hb_000637_020 Hb_084849_010--Hb_000637_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_000035_050 Hb_000035_050 Hb_084849_010--Hb_000035_050 Hb_000749_070 Hb_000749_070 Hb_084849_010--Hb_000749_070 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_093458_010 Hb_093458_010 Hb_000645_200--Hb_093458_010 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.25672 38.4769 24.174 55.2836 3.02308 4.81254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4786 13.9532 14.7674 9.15975 13.0742

CAGE analysis