Hb_001500_030

Information

Type -
Description -
Location Contig1500: 20853-29577
Sequence    

Annotation

kegg
ID rcu:RCOM_1437620
description hypothetical protein
nr
ID XP_012088752.1
description PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
swissprot
ID O22799
description Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=4 SV=2
trembl
ID A0A067JUT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23122 PE=4 SV=1
Gene Ontology
ID GO:0005737
description hydroxyproline-rich glycoprotein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12522: 23015-25360 , PASA_asmbl_12523: 28913-29563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_030 0.0 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
2 Hb_002217_090 0.0751339543 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
3 Hb_010661_010 0.0805322742 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
4 Hb_004128_030 0.0847025798 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
5 Hb_000912_100 0.1068409216 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
6 Hb_002876_210 0.1089031919 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
7 Hb_003747_210 0.1103927334 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
8 Hb_023344_110 0.1116827888 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
9 Hb_000417_300 0.114781538 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
10 Hb_001944_020 0.1216879924 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
11 Hb_124677_040 0.1226767669 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
12 Hb_012107_010 0.1227487473 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
13 Hb_003925_040 0.1284328206 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
14 Hb_000042_330 0.1287081462 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002900_120 0.1301536897 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
16 Hb_143766_030 0.1304396797 - - protein with unknown function [Ricinus communis]
17 Hb_001699_230 0.1307180167 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_002774_200 0.1308449399 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
19 Hb_000656_390 0.1317742162 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
20 Hb_004774_020 0.1334314686 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]

Gene co-expression network

sample Hb_001500_030 Hb_001500_030 Hb_002217_090 Hb_002217_090 Hb_001500_030--Hb_002217_090 Hb_010661_010 Hb_010661_010 Hb_001500_030--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_001500_030--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_001500_030--Hb_000912_100 Hb_002876_210 Hb_002876_210 Hb_001500_030--Hb_002876_210 Hb_003747_210 Hb_003747_210 Hb_001500_030--Hb_003747_210 Hb_002217_090--Hb_004128_030 Hb_002217_090--Hb_000912_100 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002217_090--Hb_002876_210 Hb_010661_010--Hb_004128_030 Hb_127311_010 Hb_127311_010 Hb_010661_010--Hb_127311_010 Hb_000252_210 Hb_000252_210 Hb_010661_010--Hb_000252_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_002686_230 Hb_002686_230 Hb_004128_030--Hb_002686_230 Hb_010407_080 Hb_010407_080 Hb_004128_030--Hb_010407_080 Hb_004128_030--Hb_003747_210 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_003975_010 Hb_003975_010 Hb_000912_100--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_000912_100--Hb_002046_060 Hb_000912_100--Hb_002876_210 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1923 8.76696 3.17447 6.52211 1.41955 1.56066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45081 2.47561 2.08659 1.5532 3.80985

CAGE analysis