Hb_127311_010

Information

Type -
Description -
Location Contig127311: 1372-3430
Sequence    

Annotation

kegg
ID rcu:RCOM_0711460
description cation:cation antiporter, putative
nr
ID KDP33926.1
description hypothetical protein JCGZ_07497 [Jatropha curcas]
swissprot
ID Q9SYG9
description Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1
trembl
ID A0A067KCH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07497 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08342: 1474-2022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127311_010 0.0 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
2 Hb_010661_010 0.0805488522 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
3 Hb_000252_210 0.0999459409 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
4 Hb_001856_220 0.1047990989 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002071_050 0.1065644329 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
6 Hb_013241_010 0.1104239813 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
7 Hb_000015_170 0.1140378287 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003918_030 0.1152449664 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
9 Hb_000479_070 0.1161648007 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_002157_080 0.1179460717 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
11 Hb_003894_120 0.1192841202 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
12 Hb_005015_080 0.1213494595 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
13 Hb_000347_400 0.1226096621 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
14 Hb_000951_130 0.1229807127 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
15 Hb_001405_160 0.1233047034 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
16 Hb_022425_060 0.1241184992 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
17 Hb_001473_110 0.1242069237 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
18 Hb_001629_060 0.1243998477 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
19 Hb_000815_240 0.1249084441 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_000649_250 0.1254267719 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_127311_010 Hb_127311_010 Hb_010661_010 Hb_010661_010 Hb_127311_010--Hb_010661_010 Hb_000252_210 Hb_000252_210 Hb_127311_010--Hb_000252_210 Hb_001856_220 Hb_001856_220 Hb_127311_010--Hb_001856_220 Hb_002071_050 Hb_002071_050 Hb_127311_010--Hb_002071_050 Hb_013241_010 Hb_013241_010 Hb_127311_010--Hb_013241_010 Hb_000015_170 Hb_000015_170 Hb_127311_010--Hb_000015_170 Hb_004128_030 Hb_004128_030 Hb_010661_010--Hb_004128_030 Hb_001500_030 Hb_001500_030 Hb_010661_010--Hb_001500_030 Hb_010661_010--Hb_000252_210 Hb_003747_210 Hb_003747_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_000252_210--Hb_002071_050 Hb_000460_060 Hb_000460_060 Hb_000252_210--Hb_000460_060 Hb_000252_210--Hb_001856_220 Hb_001405_160 Hb_001405_160 Hb_000252_210--Hb_001405_160 Hb_008937_010 Hb_008937_010 Hb_001856_220--Hb_008937_010 Hb_003181_040 Hb_003181_040 Hb_001856_220--Hb_003181_040 Hb_003918_030 Hb_003918_030 Hb_001856_220--Hb_003918_030 Hb_010407_060 Hb_010407_060 Hb_001856_220--Hb_010407_060 Hb_001545_150 Hb_001545_150 Hb_001856_220--Hb_001545_150 Hb_001856_220--Hb_002071_050 Hb_002071_050--Hb_001405_160 Hb_009028_010 Hb_009028_010 Hb_002071_050--Hb_009028_010 Hb_005015_080 Hb_005015_080 Hb_002071_050--Hb_005015_080 Hb_007850_090 Hb_007850_090 Hb_002071_050--Hb_007850_090 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28565 7.96583 2.92338 4.80281 1.39908 1.80207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30629 1.75475 3.467 1.51927 3.49549

CAGE analysis