Hb_001405_160

Information

Type -
Description -
Location Contig1405: 195626-197431
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02740g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012086430.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
swissprot
ID O04491
description Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
trembl
ID U5FHA0
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0017s02740g PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at1g09680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10976: 195922-196294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_160 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
2 Hb_001473_110 0.0747011701 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_000347_390 0.0748790808 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_000836_380 0.0749524234 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
5 Hb_000347_400 0.090639105 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
6 Hb_000017_220 0.0907668415 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
7 Hb_002307_270 0.0934631726 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_009658_030 0.0940004593 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
9 Hb_000028_130 0.0945995446 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
10 Hb_000479_070 0.0955926784 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
11 Hb_000487_380 0.0957046768 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
12 Hb_002157_080 0.0959988044 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
13 Hb_002071_050 0.0973491657 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
14 Hb_001674_030 0.0984422762 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
15 Hb_001411_140 0.0991045648 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
16 Hb_005977_070 0.1003394639 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_001488_180 0.1011679892 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
18 Hb_011242_060 0.1019700055 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
19 Hb_000069_470 0.1027781434 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_001545_150 0.1028341627 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]

Gene co-expression network

sample Hb_001405_160 Hb_001405_160 Hb_001473_110 Hb_001473_110 Hb_001405_160--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_001405_160--Hb_000347_390 Hb_000836_380 Hb_000836_380 Hb_001405_160--Hb_000836_380 Hb_000347_400 Hb_000347_400 Hb_001405_160--Hb_000347_400 Hb_000017_220 Hb_000017_220 Hb_001405_160--Hb_000017_220 Hb_002307_270 Hb_002307_270 Hb_001405_160--Hb_002307_270 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001488_180 Hb_001488_180 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_001473_110--Hb_000347_390 Hb_001473_110--Hb_000347_400 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_003768_050 Hb_003768_050 Hb_000347_390--Hb_003768_050 Hb_000347_390--Hb_000347_400 Hb_005551_020 Hb_005551_020 Hb_000347_390--Hb_005551_020 Hb_000347_390--Hb_000017_220 Hb_000836_380--Hb_002307_270 Hb_000836_380--Hb_000017_220 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010 Hb_002234_090 Hb_002234_090 Hb_000347_400--Hb_002234_090 Hb_000347_400--Hb_004916_010 Hb_003906_200 Hb_003906_200 Hb_000347_400--Hb_003906_200 Hb_022425_060 Hb_022425_060 Hb_000347_400--Hb_022425_060 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_000017_220--Hb_001488_180 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.645226 1.86821 0.484633 1.202 0.42054 0.877863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531081 0.656626 0.790067 0.729047 1.00601

CAGE analysis