Hb_000749_070

Information

Type -
Description -
Location Contig749: 61242-65286
Sequence    

Annotation

kegg
ID rcu:RCOM_1010170
description rnf5, putative
nr
ID XP_012084944.1
description PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JT22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20977 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase rma3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56778: 63392-63654 , PASA_asmbl_56779: 63792-64219 , PASA_asmbl_56781: 64381-65238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_070 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
2 Hb_013358_020 0.0599865582 - - ccr4-associated factor, putative [Ricinus communis]
3 Hb_007253_010 0.0747069124 - - syntaxin, putative [Ricinus communis]
4 Hb_001246_160 0.0968824339 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_159809_050 0.0983684436 - - AT14A, putative [Ricinus communis]
6 Hb_004117_170 0.0984009073 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
7 Hb_000035_050 0.1044049364 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
8 Hb_018790_050 0.1133690114 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_000421_230 0.1177742834 - - retinal degeneration B beta, putative [Ricinus communis]
10 Hb_005714_100 0.1255936617 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_002701_210 0.1294016514 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_000072_190 0.1304563547 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
13 Hb_000445_100 0.1305274898 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
14 Hb_000009_200 0.1315099021 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
15 Hb_003581_280 0.1318396 - - KINASE 2B family protein [Populus trichocarpa]
16 Hb_004631_200 0.1365475863 - - conserved hypothetical protein [Ricinus communis]
17 Hb_056196_060 0.1371954782 - - hexokinase [Manihot esculenta]
18 Hb_084849_010 0.1372438513 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001135_030 0.1401093479 - - PREDICTED: interaptin-like [Jatropha curcas]
20 Hb_001085_300 0.1409001389 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_070 Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_000749_070--Hb_013358_020 Hb_007253_010 Hb_007253_010 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_004117_170 Hb_004117_170 Hb_000749_070--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_000749_070--Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_007253_010 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_007253_010--Hb_159809_050 Hb_007253_010--Hb_004117_170 Hb_007253_010--Hb_000035_050 Hb_007253_010--Hb_018790_050 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_159809_050--Hb_013358_020 Hb_003581_280 Hb_003581_280 Hb_159809_050--Hb_003581_280 Hb_159809_050--Hb_000035_050 Hb_001135_030 Hb_001135_030 Hb_159809_050--Hb_001135_030 Hb_004117_170--Hb_000035_050 Hb_004117_170--Hb_018790_050 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.77088 36.5203 29.7939 25.4092 5.88969 3.21831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84792 9.06853 6.38427 5.52825 3.80134

CAGE analysis