Hb_002122_030

Information

Type -
Description -
Location Contig2122: 23405-26652
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22003: 24525-25380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_030 0.0 - - -
2 Hb_001246_160 0.1082431595 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
3 Hb_000009_200 0.1204439356 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
4 Hb_000805_040 0.1217312877 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
5 Hb_005714_100 0.1226354054 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
6 Hb_011689_100 0.1231184605 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
7 Hb_004712_160 0.1255592924 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
8 Hb_001329_080 0.132458009 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
9 Hb_001085_300 0.1381094271 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
10 Hb_008112_010 0.1398477961 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
11 Hb_000776_050 0.14414307 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
12 Hb_000272_110 0.1447909716 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
13 Hb_041895_040 0.1449606688 - - conserved hypothetical protein [Ricinus communis]
14 Hb_056196_060 0.1457092402 - - hexokinase [Manihot esculenta]
15 Hb_017857_010 0.1468228652 - - -
16 Hb_000340_560 0.1473901734 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001396_120 0.1487202564 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
18 Hb_000610_060 0.1507317919 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
19 Hb_005375_070 0.1536312471 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
20 Hb_002311_150 0.1547152707 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002122_030 Hb_002122_030 Hb_001246_160 Hb_001246_160 Hb_002122_030--Hb_001246_160 Hb_000009_200 Hb_000009_200 Hb_002122_030--Hb_000009_200 Hb_000805_040 Hb_000805_040 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_004712_160 Hb_004712_160 Hb_002122_030--Hb_004712_160 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000035_050 Hb_000035_050 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_005714_100--Hb_000035_050 Hb_005714_100--Hb_008112_010 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_012787_040 Hb_012787_040 Hb_011689_100--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_011689_100--Hb_001053_200 Hb_000610_060 Hb_000610_060 Hb_011689_100--Hb_000610_060 Hb_000803_060 Hb_000803_060 Hb_011689_100--Hb_000803_060 Hb_002233_070 Hb_002233_070 Hb_011689_100--Hb_002233_070 Hb_001898_010 Hb_001898_010 Hb_004712_160--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_004712_160--Hb_005375_070 Hb_004712_160--Hb_000805_040 Hb_005000_050 Hb_005000_050 Hb_004712_160--Hb_005000_050 Hb_007574_050 Hb_007574_050 Hb_004712_160--Hb_007574_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39002 11.3524 7.28239 5.89426 0.714111 0.471873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39465 0.817578 0.365318 2.14383 1.1756

CAGE analysis